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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • cytosol 2
  • mitochondrion 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
 extracellular: 20408568
msms PMID: 20408568 doi
W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li
Department of Plant Nutrition, China Agricultural University, Beijing, PR China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d010604_P008
Zm00001d012286_P001
Zm00001d038007_P001
Zm00001d038449_P001
Zm00001d042761_P001
Zm00001d043022_P001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G07120.1 Zm00001d012286_P001 AT5G06140.1 21156856
AT5G07120.1 Zm00001d042761_P001 AT5G06140.1 21156856
AT5G07120.1 Zm00001d010604_P008 AT5G07120.1 21156856
AT5G07120.1 Zm00001d038007_P001 AT5G07120.1 21156856
AT5G07120.1 Zm00001d038449_P001 AT5G07120.1 21156856
AT5G07120.1 Zm00001d043022_P001 AT5G07120.1 21156856
AT5G07120.1 Zm00001d010604_P008 AT5G58440.1 21156856
AT5G07120.1 Zm00001d038007_P001 AT5G58440.1 21156856
AT5G07120.1 Zm00001d038449_P001 AT5G58440.1 21156856
AT5G07120.1 Zm00001d043022_P001 AT5G58440.1 21156856
AT5G58440.1 Zm00001d012286_P001 AT5G06140.1 21156856
AT5G58440.1 Zm00001d042761_P001 AT5G06140.1 21156856
AT5G58440.1 Zm00001d010604_P008 AT5G07120.1 21156856
AT5G58440.1 Zm00001d038007_P001 AT5G07120.1 21156856
AT5G58440.1 Zm00001d038449_P001 AT5G07120.1 21156856
AT5G58440.1 Zm00001d043022_P001 AT5G07120.1 21156856
AT5G58440.1 Zm00001d010604_P008 AT5G58440.1 21156856
AT5G58440.1 Zm00001d038007_P001 AT5G58440.1 21156856
AT5G58440.1 Zm00001d038449_P001 AT5G58440.1 21156856
AT5G58440.1 Zm00001d043022_P001 AT5G58440.1 21156856
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES18029 Sorghum cytosol 83.91 84.36
Os05t0346100-01 Rice plasma membrane 77.94 79.81
TraesCS1D01G223500.1 Wheat cytosol, plastid 73.6 76.79
TraesCS1B01G235000.1 Wheat cytosol, plastid 73.24 76.42
TraesCS1A01G221800.1 Wheat cytosol, plastid 70.89 73.96
HORVU1Hr1G060480.2 Barley plastid 75.41 71.04
GSMUA_Achr8P21250_001 Banana cytosol 60.04 60.69
GSMUA_Achr10P... Banana cytosol 53.53 58.27
KRH73242 Soybean cytosol 55.15 58.21
KRH14903 Soybean cytosol 54.07 57.5
GSMUA_Achr3P10000_001 Banana mitochondrion 55.7 56.93
KRH72755 Soybean cytosol, endoplasmic reticulum 56.42 55.91
Solyc06g050550.2.1 Tomato plastid 54.25 55.45
CDX81034 Canola cytosol 49.73 55.33
PGSC0003DMT400061516 Potato cytosol 53.89 55.08
VIT_13s0067g01990.t01 Wine grape cytosol 55.52 54.82
KRH17110 Soybean cytosol 55.52 54.72
VIT_06s0004g07430.t01 Wine grape cytosol 54.79 54.5
Bra005925.1-P Field mustard cytosol 49.91 53.7
CDY58875 Canola cytosol 49.73 53.5
CDX70009 Canola cytosol 51.54 53.27
Bra009291.1-P Field mustard cytosol 50.99 52.51
CDX99005 Canola cytosol 51.18 52.5
CDY57386 Canola cytosol 52.44 51.88
Bra002651.1-P Field mustard cytosol 52.08 51.8
Solyc09g031600.2.1 Tomato cytosol 43.4 50.74
AT5G07120.1 Thale cress cytosol 51.9 50.17
Solyc09g031590.2.1 Tomato cytosol 3.07 50.0
AT5G58440.1 Thale cress cytosol 52.26 49.23
CDY32985 Canola cytosol 45.93 49.13
Zm00001d043022_P001 Maize cytosol 39.06 42.27
Zm00001d010604_P008 Maize cytosol, plastid 37.61 40.78
Zm00001d038449_P001 Maize cytosol 36.89 27.06
Zm00001d012286_P001 Maize cytosol 18.63 24.7
Zm00001d042761_P001 Maize mitochondrion 18.99 22.44
Protein Annotations
Gene3D:1.20.1270.60EntrezGene:103630267MapMan:22.5.5.3.6Gene3D:3.30.1520.10UniProt:A0A1D6M2Q6InterPro:AH/BAR_dom_sf
ProteinID:AQK85467.1ncoils:CoilGO:GO:0003674GO:GO:0005488GO:GO:0008289GO:GO:0035091
InterPro:IPR001683InterPro:IPR027267InterPro:IPR036871PFAM:PF00787PFAM:PF09325PFscan:PS50195
PANTHER:PTHR10555PANTHER:PTHR10555:SF201InterPro:PX_dom_sfInterPro:PhoxSMART:SM00312SUPFAM:SSF103657
SUPFAM:SSF64268UniParc:UPI000221A431InterPro:Vps5_CEnsemblPlantsGene:Zm00001d038007EnsemblPlants:Zm00001d038007_P001EnsemblPlants:Zm00001d038007_T001
SEG:seg:::::
Description
Sorting nexin 2B
Coordinates
chr6:+:145000655..145009587
Molecular Weight (calculated)
60604.1 Da
IEP (calculated)
5.102
GRAVY (calculated)
-0.435
Length
553 amino acids
Sequence
(BLAST)
001: MMSSTPLSQP ATAGDDDDDM ESLPLAAASD YASVASTFDP LFSSTSATAT SPRSPPTRAA AFTLSPTFSS SFVDPPSYAD ATGAGAGAVS SSPCSASSPS
101: SASPRSARVA ASEYSFLAVS DPETEAEPAA TSLVPGSAPT YVSYLVTSVR RGDPDQRRHS VRRRFRDFVT LADRLADAFR GHFVPPRPDK NTVESQVMQR
201: DEFVAQRRAA LERYLWRLAE HPAIGPSDEL RVFLQAEGKM PLPGTTDMAS RMLDGAARLP RQLIAGEDTV TAPQEVVQPA KGGRDLLRIF KELKQSVVTD
301: WAGVKPPLVE EDREFLEKKE KLQEWEQQLT SASQQAEALV KAQQDMAETM GALGLAFVRL TKFETEEAMY DSQRMRAADS RRVATAAVKA SRACRDLNAQ
401: TVKYLDTLHE HLSIMLSVRT AFSDRASALL TVQTLMSDLA SLESRIEKLE AASLKIFGGD KARTRKVEEL RETIRATEDA KFCALREYER IKENNRSELQ
501: RLDSERKEEF MRMLKGFVAS QAAYADKIVD GWETVAEETS GYVGVRGSDS MTS
Best Arabidopsis Sequence Match ( AT5G07120.2 )
(BLAST)
001: MMGSENDEES HLHSSKEEME KLFLREDGDP LTKSNVNGDK SNSNYRSAMS TLFDSRHPSI VVTPADSDPL FAPPSYYSES RSPRSKPNGG DRVSSYLEPP
101: SYADVIFSPF DDISEINGSE DGHSQSSDSL SRSPSSLSSD YIKITVSNPQ KEQEATNSMI PGGSTYITYQ ITTRTNLSDY GGSEFSVRRR FRDIVTLADR
201: LAESYRGFCI PPRPDKSIVE SQVMQKQEFV EQRRVALEKY LRRLVAHPVI RNSDELKVFL QAQGKLPLAT STDVASRMLD GAVKLPKQLF GEGGGASSVE
301: VVQPGRGGRD FLRMFKELRQ SVSNDWGGSK PPVVEEDKEF LEKKEKMYDL EQQIINASQQ AESLVKAQQD MGETMGELGL AFIKLTKFEN EEAVFNSQRA
401: RANDMKNLAT SAVKASRFYR ELNSQTVKHL DTLHDYLGLM MAVQGAFADR SSALLTVQTL LSELSSLEAR AEKLEVASSK VFGGDKSRIK KIEELKETIK
501: VTEDSKNVAI REYEQIKENN WSEVERLDRE RRADFLNMMK GFVANQVGYA EKIANVWTKV AEETRQYDRE SS
Arabidopsis Description
SNX2BSorting nexin 2B [Source:UniProtKB/Swiss-Prot;Acc:B9DFS6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.