Factsheet for Bra009291.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002651.1-P
Bra005925.1-P
Bra009166.1-P
Bra009291.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07120.1	Bra009166.1-P	AT5G06140.1	21156856
AT5G07120.1	Bra005925.1-P	AT5G07120.1	21156856
AT5G07120.1	Bra009291.1-P	AT5G07120.1	21156856
AT5G07120.1	Bra002651.1-P	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70009	Canola	cytosol	93.3	93.64
Bra005925.1-P	Field mustard	cytosol	73.0	76.26
Bra002651.1-P	Field mustard	cytosol	76.72	74.1
AT5G07120.1	Thale cress	cytosol	76.91	72.2
Solyc09g031590.2.1	Tomato	cytosol	4.1	64.71
VIT_06s0004g07430.t01	Wine grape	cytosol	66.48	64.21
KRH72755	Soybean	cytosol, endoplasmic reticulum	65.18	62.72
KRH17110	Soybean	cytosol	64.62	61.85
GSMUA_Achr8P21250_001	Banana	cytosol	60.52	59.41
GSMUA_Achr10P...	Banana	cytosol	55.49	58.66
TraesCS1B01G235000.1	Wheat	cytosol, plastid	55.12	55.85
GSMUA_Achr3P10000_001	Banana	mitochondrion	56.24	55.82
TraesCS1D01G223500.1	Wheat	cytosol, plastid	54.56	55.28
TraesCS1A01G221800.1	Wheat	cytosol, plastid	53.63	54.34
Os05t0346100-01	Rice	plasma membrane	54.19	53.89
GSMUA_Achr11P...	Banana	nucleus	52.7	53.8
Zm00001d038007_P001	Maize	extracellular	52.51	50.99
EES18029	Sorghum	cytosol	51.96	50.73
HORVU1Hr1G060480.2	Barley	plastid	54.75	50.09
Os01t0827200-01	Rice	cytosol, extracellular	38.36	40.87
Zm00001d043022_P001	Maize	cytosol	38.36	40.31
TraesCS3A01G347900.1	Wheat	cytosol	38.36	40.31
TraesCS3D01G341500.1	Wheat	cytosol	38.17	40.12
Zm00001d010604_P008	Maize	cytosol, plastid	37.99	40.0
TraesCS3B01G379800.1	Wheat	cytosol	37.99	39.92
OQU87773	Sorghum	cytosol	37.99	39.69
TraesCS1B01G307500.1	Wheat	cytosol	37.8	39.27
OQU78173	Sorghum	cytosol	32.77	38.77
TraesCS1A01G298000.1	Wheat	cytosol	37.24	38.76
TraesCS1D01G293200.1	Wheat	cytosol	36.87	38.45
Zm00001d038449_P001	Maize	cytosol	37.24	26.53
Bra009166.1-P	Field mustard	cytosol	18.44	25.38

Protein Annotations

Gene3D:1.20.1270.60	MapMan:22.5.5.3.6	Gene3D:3.30.1520.10	InterPro:AH/BAR_dom_sf	EnsemblPlantsGene:Bra009291	EnsemblPlants:Bra009291.1
EnsemblPlants:Bra009291.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0008289	GO:GO:0035091
InterPro:IPR001683	InterPro:IPR027267	InterPro:IPR036871	UniProt:M4CYJ4	PFAM:PF00787	PFAM:PF09325
PFscan:PS50195	PANTHER:PTHR10555	PANTHER:PTHR10555:SF201	InterPro:PX_dom_sf	InterPro:Phox	SMART:SM00312
SUPFAM:SSF64268	UniParc:UPI000254397D	InterPro:Vps5_C	SEG:seg	:	:

Description

AT5G07120 (E=1e-218) SNX2b | SNX2b (SORTING NEXIN 2b); phosphoinositide binding / protein binding

Coordinates

chrA10:+:16017723..16019709

Molecular Weight (calculated)

59946.1 Da

IEP (calculated)

4.789

GRAVY (calculated)

-0.606

Length

537 amino acids

Sequence
(BLAST)

001: MMGSENDDEA HLHASTEEDM ENLFLRDDAD KSNSPPPITV TPADSDPLSA TPQSKPNGGD SRSYIEPPSY ADVIFSPFDD TSEINGSDDT HSSDYSLSRS
101: PSSSASSSDY IKITVSSPQK EQETSTSMLS GGSTYITYLI TTRTNLPDYG GGSEFSVRRR FRDVVTLADR LAESYRGFCI PPRPDKSVVE SQVMQKQEFV
201: EQRRVALEKY LRRLVAHPVI RSSDEVKVFL RVEGKLPLQA SADVASRMLD GAVKLPRQLF GEGGGGVETA RGGRDLLRLF KELRQSVSND WGGSKPLVVE
301: EDRDFLEKKE KMVDLEQQII NASQQAETLV KAQQEMGETM GELGLAFIKL TKFENEEAVF NSQRARANDM KNLATAAVKA SRFYRELNSQ TVEHLDTLHD
401: YLGLMLAVQG AFADRSSALL TVQTLLSELS SLEGRAEKLE AALSKVFGGD KSRIKKIEEI KETIRNTEDA KNVAIREYER IKENNWSEVE RLDRERRADF
501: LSMMKGFVVN QVGYAEKIAS VWTKAAEETS QYDRESS

Best Arabidopsis Sequence Match ( AT5G07120.2 )
(BLAST)

001: MMGSENDEES HLHSSKEEME KLFLREDGDP LTKSNVNGDK SNSNYRSAMS TLFDSRHPSI VVTPADSDPL FAPPSYYSES RSPRSKPNGG DRVSSYLEPP
101: SYADVIFSPF DDISEINGSE DGHSQSSDSL SRSPSSLSSD YIKITVSNPQ KEQEATNSMI PGGSTYITYQ ITTRTNLSDY GGSEFSVRRR FRDIVTLADR
201: LAESYRGFCI PPRPDKSIVE SQVMQKQEFV EQRRVALEKY LRRLVAHPVI RNSDELKVFL QAQGKLPLAT STDVASRMLD GAVKLPKQLF GEGGGASSVE
301: VVQPGRGGRD FLRMFKELRQ SVSNDWGGSK PPVVEEDKEF LEKKEKMYDL EQQIINASQQ AESLVKAQQD MGETMGELGL AFIKLTKFEN EEAVFNSQRA
401: RANDMKNLAT SAVKASRFYR ELNSQTVKHL DTLHDYLGLM MAVQGAFADR SSALLTVQTL LSELSSLEAR AEKLEVASSK VFGGDKSRIK KIEELKETIK
501: VTEDSKNVAI REYEQIKENN WSEVERLDRE RRADFLNMMK GFVANQVGYA EKIANVWTKV AEETRQYDRE SS

Arabidopsis Description

SNX2BSorting nexin 2B [Source:UniProtKB/Swiss-Prot;Acc:B9DFS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.