Factsheet for Bra005925.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002651.1-P
Bra005925.1-P
Bra009166.1-P
Bra009291.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07120.1	Bra009166.1-P	AT5G06140.1	21156856
AT5G07120.1	Bra005925.1-P	AT5G07120.1	21156856
AT5G07120.1	Bra009291.1-P	AT5G07120.1	21156856
AT5G07120.1	Bra002651.1-P	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58875	Canola	cytosol	97.47	97.47
CDX81034	Canola	cytosol	89.3	92.35
Bra009291.1-P	Field mustard	cytosol	76.26	73.0
Bra002651.1-P	Field mustard	cytosol	74.32	68.7
AT5G07120.1	Thale cress	cytosol	76.26	68.53
Solyc09g031590.2.1	Tomato	cytosol	4.28	64.71
VIT_06s0004g07430.t01	Wine grape	cytosol	66.73	61.69
KRH72755	Soybean	cytosol, endoplasmic reticulum	66.15	60.93
KRH17110	Soybean	cytosol	66.15	60.61
GSMUA_Achr8P21250_001	Banana	cytosol	61.28	57.59
GSMUA_Achr10P...	Banana	cytosol	56.23	56.89
GSMUA_Achr3P10000_001	Banana	mitochondrion	56.42	53.6
Os05t0346100-01	Rice	plasma membrane	55.84	53.15
TraesCS1D01G223500.1	Wheat	cytosol, plastid	54.28	52.64
TraesCS1B01G235000.1	Wheat	cytosol, plastid	54.28	52.64
TraesCS1A01G221800.1	Wheat	cytosol, plastid	53.89	52.26
GSMUA_Achr11P...	Banana	nucleus	52.53	51.33
EES18029	Sorghum	cytosol	53.5	50.0
Zm00001d038007_P001	Maize	extracellular	53.7	49.91
HORVU1Hr1G060480.2	Barley	plastid	53.7	47.02
Zm00001d043022_P001	Maize	cytosol	41.05	41.29
Os01t0827200-01	Rice	cytosol, extracellular	40.47	41.27
TraesCS1B01G307500.1	Wheat	cytosol	41.25	41.01
TraesCS1A01G298000.1	Wheat	cytosol	40.27	40.12
OQU87773	Sorghum	cytosol	40.08	40.08
Zm00001d010604_P008	Maize	cytosol, plastid	39.69	40.0
TraesCS1D01G293200.1	Wheat	cytosol	39.88	39.81
OQU78173	Sorghum	cytosol	34.82	39.43
TraesCS3A01G347900.1	Wheat	cytosol	38.72	38.94
TraesCS3B01G379800.1	Wheat	cytosol	38.52	38.75
TraesCS3D01G341500.1	Wheat	cytosol	38.33	38.55
Bra009166.1-P	Field mustard	cytosol	20.04	26.41
Zm00001d038449_P001	Maize	cytosol	38.72	26.39

Protein Annotations

Gene3D:1.20.1270.60	MapMan:22.5.5.3.6	Gene3D:3.30.1520.10	InterPro:AH/BAR_dom_sf	EnsemblPlantsGene:Bra005925	EnsemblPlants:Bra005925.1
EnsemblPlants:Bra005925.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0008289	GO:GO:0035091
InterPro:IPR001683	InterPro:IPR027267	InterPro:IPR036871	UniProt:M4CNY7	PFAM:PF00787	PFAM:PF09325
PFscan:PS50195	PANTHER:PTHR10555	PANTHER:PTHR10555:SF201	InterPro:PX_dom_sf	InterPro:Phox	SMART:SM00312
SUPFAM:SSF103657	SUPFAM:SSF64268	UniParc:UPI000253F661	InterPro:Vps5_C	SEG:seg	:

Description

AT5G07120 (E=4e-183) SNX2b | SNX2b (SORTING NEXIN 2b); phosphoinositide binding / protein binding

Coordinates

chrA03:-:1239457..1241354

Molecular Weight (calculated)

57440.7 Da

IEP (calculated)

5.269

GRAVY (calculated)

-0.539

Length

514 amino acids

Sequence
(BLAST)

001: MMGSENDEDS HLHASKEEME SLFLRDDNGS HHLSPPPIIV TPADSDPLSL PPNGGTSYIE PPSYADVVFS PFDDSDDSSD TLSRSPSSSS SSDYIKITVS
101: SPQKEQEAAS SMLSGGSTYV TYLITTRTNL PEYKGSDFTV RRRFRDVVAL ADRLAESYKG FCIPPRPDKS VVESQVMQRQ EFVEQRRVAL EKYLRRLAAH
201: PVIRCSDELK VFLQVEGKLP LTLQMGTGVA SRVLDGGVSV VEVAQPARSG RDLFRLFKEL RQSVSNDWGG AKPAVVEEDK EFLEKKEKMH DLEKEIINAS
301: QQAETLVKAQ QDMGETMGEL GLAFIKLTKF ENEEAVFNSQ RARANDMKNL ATVAVKASRF YRELNSQTVK HLDTLHDYLG VMMAVQGAFA NRSSALLTVQ
401: TLLSEVSSLE GRAEKLEAAS SKVFGGDKSR IKKIEELKET IKATEDAKNV AIRDYERIKE NNRSEVERLD RERRADFLSM MKGFVVNQVG YAEKMANVWA
501: KVAEETSQYN RESS

Best Arabidopsis Sequence Match ( AT5G07120.2 )
(BLAST)

001: MMGSENDEES HLHSSKEEME KLFLREDGDP LTKSNVNGDK SNSNYRSAMS TLFDSRHPSI VVTPADSDPL FAPPSYYSES RSPRSKPNGG DRVSSYLEPP
101: SYADVIFSPF DDISEINGSE DGHSQSSDSL SRSPSSLSSD YIKITVSNPQ KEQEATNSMI PGGSTYITYQ ITTRTNLSDY GGSEFSVRRR FRDIVTLADR
201: LAESYRGFCI PPRPDKSIVE SQVMQKQEFV EQRRVALEKY LRRLVAHPVI RNSDELKVFL QAQGKLPLAT STDVASRMLD GAVKLPKQLF GEGGGASSVE
301: VVQPGRGGRD FLRMFKELRQ SVSNDWGGSK PPVVEEDKEF LEKKEKMYDL EQQIINASQQ AESLVKAQQD MGETMGELGL AFIKLTKFEN EEAVFNSQRA
401: RANDMKNLAT SAVKASRFYR ELNSQTVKHL DTLHDYLGLM MAVQGAFADR SSALLTVQTL LSELSSLEAR AEKLEVASSK VFGGDKSRIK KIEELKETIK
501: VTEDSKNVAI REYEQIKENN WSEVERLDRE RRADFLNMMK GFVANQVGYA EKIANVWTKV AEETRQYDRE SS

Arabidopsis Description

SNX2BSorting nexin 2B [Source:UniProtKB/Swiss-Prot;Acc:B9DFS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.