CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES03929
EES18029
OQU78173
OQU87773

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07120.1	EES03929	AT5G06140.1	21156856
AT5G07120.1	EES18029	AT5G07120.1	21156856
AT5G07120.1	OQU78173	AT5G07120.1	21156856
AT5G07120.1	OQU87773	AT5G07120.1	21156856
AT5G07120.1	EES18029	AT5G58440.1	21156856
AT5G07120.1	OQU78173	AT5G58440.1	21156856
AT5G07120.1	OQU87773	AT5G58440.1	21156856
AT5G58440.1	EES03929	AT5G06140.1	21156856
AT5G58440.1	EES18029	AT5G07120.1	21156856
AT5G58440.1	OQU78173	AT5G07120.1	21156856
AT5G58440.1	OQU87773	AT5G07120.1	21156856
AT5G58440.1	EES18029	AT5G58440.1	21156856
AT5G58440.1	OQU78173	AT5G58440.1	21156856
AT5G58440.1	OQU87773	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G298000.1	Wheat	cytosol	69.6	61.24
TraesCS1B01G307500.1	Wheat	cytosol	68.72	60.35
TraesCS1D01G293200.1	Wheat	cytosol	67.62	59.61
OQU87773	Sorghum	cytosol	54.85	48.44
Zm00001d038449_P001	Maize	cytosol	79.52	47.88
GSMUA_Achr11P...	Banana	nucleus	41.63	35.93
CDX81034	Canola	cytosol	38.99	35.61
Solyc09g031600.2.1	Tomato	cytosol	36.56	35.1
Bra005925.1-P	Field mustard	cytosol	39.43	34.82
CDY58875	Canola	cytosol	38.77	34.24
Solyc06g050550.2.1	Tomato	plastid	40.75	34.2
PGSC0003DMT400061516	Potato	cytosol	40.75	34.2
VIT_06s0004g07430.t01	Wine grape	cytosol	41.63	33.99
KRH14903	Soybean	cytosol	38.33	33.46
EES18029	Sorghum	cytosol	40.09	33.09
CDX99005	Canola	cytosol	38.99	32.84
KRH72755	Soybean	cytosol, endoplasmic reticulum	40.31	32.8
Bra009291.1-P	Field mustard	cytosol	38.77	32.77
CDY32985	Canola	cytosol	37.22	32.69
CDY57386	Canola	cytosol	40.09	32.56
Bra002651.1-P	Field mustard	cytosol	39.87	32.55
CDX70009	Canola	cytosol	38.33	32.52
KRH73242	Soybean	cytosol	37.44	32.44
KRH17110	Soybean	cytosol	39.65	32.09
VIT_13s0067g01990.t01	Wine grape	cytosol	39.21	31.79
AT5G58440.1	Thale cress	cytosol	40.53	31.35
AT5G07120.1	Thale cress	cytosol	39.21	31.12
EES03929	Sorghum	plastid	17.18	19.5
Solyc09g031590.2.1	Tomato	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.1270.60	MapMan:22.5.5.3.6	Gene3D:3.30.1520.10	UniProt:A0A1Z5R336	InterPro:AH/BAR_dom_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0008289	GO:GO:0035091	InterPro:IPR001683	InterPro:IPR027267
InterPro:IPR036871	EnsemblPlants:OQU78173	ProteinID:OQU78173	ProteinID:OQU78173.1	PFAM:PF00787	PFAM:PF09325
PFscan:PS50195	PANTHER:PTHR10555	PANTHER:PTHR10555:SF146	InterPro:PX_dom_sf	InterPro:Phox	SMART:SM00312
EnsemblPlantsGene:SORBI_3009G171200	SUPFAM:SSF64268	UniParc:UPI000B8BA55F	InterPro:Vps5_C	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:+:52671164..52672769

Molecular Weight (calculated)

49234.0 Da

IEP (calculated)

7.266

GRAVY (calculated)

-0.340

Length

454 amino acids

Sequence
(BLAST)

001: MAAEPSPSVP STAADDLETL ALDSSSSSAA ATASASTDPL LRPPTSPTAA SDDHFVIDDF LDEDDFSTTP SPSVVRPPRA ARGDAASPVF AKITVSDPKK
101: HAEPSGGGAA GVIPGSGSYF SYLITTRFAG GGGEVRVRRR FRDVVALADR LAAAHRGLFV PARPDKSVLE GQVIQRHDFV SQRCAALQRY LCRLAAHPIV
201: GQSPDLRTFL TEPGAIPAFQ GEAPRYWTST VNAAAPLVPT KAGRDLFGMF KGLKQTLVNG LVATKPPPVE QETDTEFLAH KARFEDLQQQ LTTTSQQAEA
301: LVKAQDDLRE TTGHLGMTLI KLAKFEREQA TCNSLRRRAG EIHSFANSVL KMSRSQIKLN SEIVKHLGSI HEYLEMMISV HHAFTDRSNA LHYVQSLSAD
401: LFSLHTRAGR LESSSARDMG HEWSTYQKVE GLKETIRSAE AAKSDALREY ESIK

Best Arabidopsis Sequence Match ( AT5G07120.2 )
(BLAST)

001: MMGSENDEES HLHSSKEEME KLFLREDGDP LTKSNVNGDK SNSNYRSAMS TLFDSRHPSI VVTPADSDPL FAPPSYYSES RSPRSKPNGG DRVSSYLEPP
101: SYADVIFSPF DDISEINGSE DGHSQSSDSL SRSPSSLSSD YIKITVSNPQ KEQEATNSMI PGGSTYITYQ ITTRTNLSDY GGSEFSVRRR FRDIVTLADR
201: LAESYRGFCI PPRPDKSIVE SQVMQKQEFV EQRRVALEKY LRRLVAHPVI RNSDELKVFL QAQGKLPLAT STDVASRMLD GAVKLPKQLF GEGGGASSVE
301: VVQPGRGGRD FLRMFKELRQ SVSNDWGGSK PPVVEEDKEF LEKKEKMYDL EQQIINASQQ AESLVKAQQD MGETMGELGL AFIKLTKFEN EEAVFNSQRA
401: RANDMKNLAT SAVKASRFYR ELNSQTVKHL DTLHDYLGLM MAVQGAFADR SSALLTVQTL LSELSSLEAR AEKLEVASSK VFGGDKSRIK KIEELKETIK
501: VTEDSKNVAI REYEQIKENN WSEVERLDRE RRADFLNMMK GFVANQVGYA EKIANVWTKV AEETRQYDRE SS

Arabidopsis Description

SNX2BSorting nexin 2B [Source:UniProtKB/Swiss-Prot;Acc:B9DFS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.