Factsheet for PGSC0003DMT400061516

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g050550.2.1	Tomato	plastid	96.49	96.49
KRH14903	Soybean	cytosol	66.17	68.85
VIT_13s0067g01990.t01	Wine grape	cytosol	70.61	68.21
KRH73242	Soybean	cytosol	64.88	66.98
GSMUA_Achr8P21250_001	Banana	cytosol	63.22	62.52
GSMUA_Achr10P...	Banana	cytosol	58.6	62.4
GSMUA_Achr3P10000_001	Banana	mitochondrion	58.96	58.96
TraesCS1D01G223500.1	Wheat	cytosol, plastid	55.45	56.6
TraesCS1B01G235000.1	Wheat	cytosol, plastid	55.27	56.42
Os05t0346100-01	Rice	plasma membrane	56.01	56.11
TraesCS1A01G221800.1	Wheat	cytosol, plastid	54.9	56.04
GSMUA_Achr11P...	Banana	nucleus	53.79	55.32
EES18029	Sorghum	cytosol	54.9	54.0
Zm00001d038007_P001	Maize	extracellular	55.08	53.89
HORVU1Hr1G060480.2	Barley	plastid	55.08	50.77
Os01t0827200-01	Rice	cytosol, extracellular	40.3	43.25
OQU87773	Sorghum	cytosol	41.04	43.19
Zm00001d043022_P001	Maize	cytosol	39.93	42.27
TraesCS3B01G379800.1	Wheat	cytosol	39.93	42.27
TraesCS3A01G347900.1	Wheat	cytosol	39.74	42.07
Zm00001d010604_P008	Maize	cytosol, plastid	39.56	41.96
TraesCS3D01G341500.1	Wheat	cytosol	39.37	41.68
OQU78173	Sorghum	cytosol	34.2	40.75
TraesCS1B01G307500.1	Wheat	cytosol	38.82	40.62
TraesCS1D01G293200.1	Wheat	cytosol	38.26	40.19
TraesCS1A01G298000.1	Wheat	cytosol	37.71	39.53
Zm00001d038449_P001	Maize	cytosol	38.45	27.59
PGSC0003DMT400022861	Potato	cytosol	17.01	25.07

Protein Annotations

Gene3D:1.20.1270.60	EntrezGene:102579002	MapMan:22.5.5.3.6	Gene3D:3.30.1520.10	InterPro:AH/BAR_dom_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0008289	GO:GO:0035091	InterPro:IPR001683	InterPro:IPR027267
InterPro:IPR036871	UniProt:M1C7M2	PFAM:PF00787	PFAM:PF09325	EnsemblPlantsGene:PGSC0003DMG400023942	PGSC:PGSC0003DMG400023942
EnsemblPlants:PGSC0003DMT400061516	PFscan:PS50195	PANTHER:PTHR10555	PANTHER:PTHR10555:SF201	InterPro:PX_dom_sf	InterPro:Phox
SMART:SM00312	SUPFAM:SSF103657	SUPFAM:SSF64268	UniParc:UPI000295014D	InterPro:Vps5_C	RefSeq:XP_006353417.1
SEG:seg	:	:	:	:	:

Description

Sorting nexin-4 [Source:PGSC_GENE;Acc:PGSC0003DMG400023942]

Coordinates

chr6:+:30435979..30443437

Molecular Weight (calculated)

60658.3 Da

IEP (calculated)

5.467

GRAVY (calculated)

-0.583

Length

541 amino acids

Sequence
(BLAST)

001: MMGYENQESH LYASKEEMES LVLDDDSPTG TAQPFSDPLS SSSSLPFAEI PTDQSQTPNS SFNSILEPPS YAEAIFRSFD ADHSSPQLNG AHDHSIASPS
101: SPPSSDDFLT ITVSDPQKEQ ELSNSLVPGG TAYVTYLITT RTNLPEFDGT EFSVRRRFRD VVTLSDRLAE SYRGFFIPLR PDKSVVESQV MQKQEFLEQR
201: RAALEKYLRR LAAHPVIRRS EELRMFLEAN GKLPLVRTTD VASRMLDGAV QLPKQIFGET AGGMVDANEV AQPAKGGRDL LRIFRELKQS VSNDWGGVKP
301: PVVEEDKELV EKKQKLHDFE QQLSNVSQQA EALVKAQQDI GETMGQMGLA FVKLTKFETE RAVYDSQRTR AADMKNVATA SVKASRLYRE LNAQTVKHLD
401: KLHEYLGVML AVNNAFSDRS SALLTVQTLL SELSSLNSRI EKLEAAASKI FGGDRSRIRK IEELKETHRV TEDAKSSAVR EYERIKENNK NELERFEKER
501: HDDFLGMLRG FIVNQAGYAE KMANVWKTVA EETSGYAKHG S

Best Arabidopsis Sequence Match ( AT5G58440.1 )
(BLAST)

001: MMGSENADGF EETNLNAQRD DMENLDLGVD GGDHPLKISD VNGDTSNSGY RSAMSTLSNV RDPLSPPPTV MIPADSDPLL APSSYEDFRS SFSSKPISSD
101: NSYIEPPSYA DVIFSPFDEN SDSEINGTED NSLHSQFSDS LSRSPSSSSS DYIKITVSNP QKEQEISNSI VGGNTYITYQ ITTRTNLPDF GGPSEFSVRR
201: RFRDVVTLAD RLAETYRGFC IPPRPDKSVV ESQVMQKQEF VEQRRVALEK YLRRLSAHPV IRNSDELKVF LQVQGKLPLP MSTDVASRML DGAVKLPKQL
301: FGEGGASAVP VTEVGQPARG GRDLLRLFKE LRQSVSNDWG GSKPPVVEED KEFLEKKEKM HDLEQQIINA SQQAESLVKA QQDMGETMGE LGLAFIKLTK
401: FENEEAVCNP QRTRANDMKN LATAAVKASR FYRELNSQTV KHLDTLHEYL GMMMAVQGAF ADRSSALLTV QTLLSELPSL QTRVEKLEAA SSKVFGGDKS
501: RIRKIEELKE TIKVTEDAKN VAIKGYERIK ENNRSEVERL DRERRADFMN MMKGFVVNQV GYAEKMGNVW AKVAEETSQY DREKQSS

Arabidopsis Description

SNX2ASNX2a [Source:UniProtKB/TrEMBL;Acc:A0A178UPE2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.