Factsheet for GSMUA_Achr11P08360_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr3P10000_001
GSMUA_Achr8P21250_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07120.1	GSMUA_Achr10P...	AT5G06140.1	21156856
AT5G07120.1	GSMUA_Achr10P...	AT5G07120.1	21156856
AT5G07120.1	GSMUA_Achr11P...	AT5G07120.1	21156856
AT5G07120.1	GSMUA_Achr3P10000_001	AT5G07120.1	21156856
AT5G07120.1	GSMUA_Achr8P21250_001	AT5G07120.1	21156856
AT5G07120.1	GSMUA_Achr10P...	AT5G58440.1	21156856
AT5G07120.1	GSMUA_Achr11P...	AT5G58440.1	21156856
AT5G07120.1	GSMUA_Achr3P10000_001	AT5G58440.1	21156856
AT5G07120.1	GSMUA_Achr8P21250_001	AT5G58440.1	21156856
AT5G58440.1	GSMUA_Achr10P...	AT5G06140.1	21156856
AT5G58440.1	GSMUA_Achr10P...	AT5G07120.1	21156856
AT5G58440.1	GSMUA_Achr11P...	AT5G07120.1	21156856
AT5G58440.1	GSMUA_Achr3P10000_001	AT5G07120.1	21156856
AT5G58440.1	GSMUA_Achr8P21250_001	AT5G07120.1	21156856
AT5G58440.1	GSMUA_Achr10P...	AT5G58440.1	21156856
AT5G58440.1	GSMUA_Achr11P...	AT5G58440.1	21156856
AT5G58440.1	GSMUA_Achr3P10000_001	AT5G58440.1	21156856
AT5G58440.1	GSMUA_Achr8P21250_001	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P21250_001	Banana	cytosol	60.08	57.77
GSMUA_Achr10P...	Banana	cytosol	54.56	56.5
Solyc09g031590.2.1	Tomato	cytosol	3.61	55.88
VIT_06s0004g07430.t01	Wine grape	cytosol	57.41	54.32
GSMUA_Achr3P10000_001	Banana	mitochondrion	55.51	53.97
KRH14903	Soybean	cytosol	53.23	53.85
PGSC0003DMT400061516	Potato	cytosol	55.32	53.79
CDX81034	Canola	cytosol	50.57	53.52
Solyc06g050550.2.1	Tomato	plastid	54.94	53.42
KRH17110	Soybean	cytosol	56.84	53.3
Bra009291.1-P	Field mustard	cytosol	53.8	52.7
VIT_13s0067g01990.t01	Wine grape	cytosol	56.08	52.68
Bra005925.1-P	Field mustard	cytosol	51.33	52.53
CDX70009	Canola	cytosol	53.42	52.52
KRH73242	Soybean	cytosol	52.28	52.48
CDY58875	Canola	cytosol	50.95	52.14
Bra002651.1-P	Field mustard	cytosol	54.75	51.8
KRH72755	Soybean	cytosol, endoplasmic reticulum	54.94	51.79
CDX99005	Canola	cytosol	52.85	51.58
CDY57386	Canola	cytosol	54.75	51.52
AT5G07120.1	Thale cress	cytosol	54.56	50.17
Solyc09g031600.2.1	Tomato	cytosol	45.06	50.11
CDY32985	Canola	cytosol	48.48	49.32
AT5G58440.1	Thale cress	cytosol	54.94	49.23
Os01t0827200-01	Rice	cytosol, extracellular	41.06	42.86
TraesCS1B01G307500.1	Wheat	cytosol	42.02	42.75
TraesCS1D01G293200.1	Wheat	cytosol	41.63	42.52
TraesCS3A01G347900.1	Wheat	cytosol	40.87	42.07
TraesCS3B01G379800.1	Wheat	cytosol	40.87	42.07
TraesCS3D01G341500.1	Wheat	cytosol	40.87	42.07
TraesCS1A01G298000.1	Wheat	cytosol	41.25	42.05
OQU87773	Sorghum	cytosol	40.87	41.83
Zm00001d010604_P008	Maize	cytosol, plastid	40.49	41.76
Zm00001d043022_P001	Maize	cytosol	40.49	41.68
OQU78173	Sorghum	cytosol	35.93	41.63
Zm00001d038449_P001	Maize	cytosol	39.92	27.85
GSMUA_Achr10P...	Banana	cytosol, plastid	17.49	22.72

Protein Annotations

Gene3D:1.20.1270.60	MapMan:22.5.5.3.6	Gene3D:3.30.1520.10	InterPro:AH/BAR_dom_sf	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0008289	GO:GO:0035091	EnsemblPlantsGene:GSMUA_Achr11G08360_001	EnsemblPlants:GSMUA_Achr11P08360_001	EnsemblPlants:GSMUA_Achr11T08360_001
InterPro:IPR001683	InterPro:IPR027267	InterPro:IPR036871	UniProt:M0RQG6	PFAM:PF00787	PFAM:PF09325
PFscan:PS50195	PANTHER:PTHR10555	PANTHER:PTHR10555:SF201	InterPro:PX_dom_sf	InterPro:Phox	SMART:SM00312
SUPFAM:SSF64268	UniParc:UPI000295721B	InterPro:Vps5_C	SEG:seg	:	:

Description

Putative Sorting nexin-2 [Source:GMGC_GENE;Acc:GSMUA_Achr11G08360_001]

Coordinates

chr11:+:6452244..6457760

Molecular Weight (calculated)

58105.7 Da

IEP (calculated)

6.875

GRAVY (calculated)

-0.511

Length

526 amino acids

Sequence
(BLAST)

001: MEALPVAGDR RGILSAVPAA LNGGDPLLHP SPAPDSPPFP SAPGALDPDA IFSLFDPSEN GGDDGDDGGD APVSPRGSDA PSRSARSSAS EYSRITVSDP
101: QKEQETTSSL VPGSGFFVTY LITTRFVSGS GGGLAEIRVR RRFKDVVALA DRLSEAYRGY FVPQRPDKSV VEGQVMQKHE FVEQRRSAIE KYLNRLAAHP
201: VIVKSDELRV FLRMPVKSPS PSTEVALRMS DGVGALSKQV SGETRGRNVE VATQGVVQPA KGRRDFMRMF RELKQAVTND WGGVKSLVVE EDKEFLEKKG
301: KLQDLEQQLT TASKQAEALV KAKQDIGDTM GELGLTFVKL AKFEMENATY HSQRSRAAEI KHFATAALRT SRFYRESNTQ TVKHLDTLHE YLGLMLAVHS
401: AFSDRSTALS TVQTLTSDLS SLLAREEKLE ASSMRFGGDK SKIHRIEELR ETIRNTEDAK ICAIKDYECI KENNKNELER LDRERHEDFL VMLKGFVSNQ
501: VIYAEKIANV WANVAEETKG YTSQSK

Best Arabidopsis Sequence Match ( AT5G07120.2 )
(BLAST)

001: MMGSENDEES HLHSSKEEME KLFLREDGDP LTKSNVNGDK SNSNYRSAMS TLFDSRHPSI VVTPADSDPL FAPPSYYSES RSPRSKPNGG DRVSSYLEPP
101: SYADVIFSPF DDISEINGSE DGHSQSSDSL SRSPSSLSSD YIKITVSNPQ KEQEATNSMI PGGSTYITYQ ITTRTNLSDY GGSEFSVRRR FRDIVTLADR
201: LAESYRGFCI PPRPDKSIVE SQVMQKQEFV EQRRVALEKY LRRLVAHPVI RNSDELKVFL QAQGKLPLAT STDVASRMLD GAVKLPKQLF GEGGGASSVE
301: VVQPGRGGRD FLRMFKELRQ SVSNDWGGSK PPVVEEDKEF LEKKEKMYDL EQQIINASQQ AESLVKAQQD MGETMGELGL AFIKLTKFEN EEAVFNSQRA
401: RANDMKNLAT SAVKASRFYR ELNSQTVKHL DTLHDYLGLM MAVQGAFADR SSALLTVQTL LSELSSLEAR AEKLEVASSK VFGGDKSRIK KIEELKETIK
501: VTEDSKNVAI REYEQIKENN WSEVERLDRE RRADFLNMMK GFVANQVGYA EKIANVWTKV AEETRQYDRE SS

Arabidopsis Description

SNX2BSorting nexin 2B [Source:UniProtKB/Swiss-Prot;Acc:B9DFS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.