CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70009
CDX81034
CDX98906
CDX99005
CDY32985
CDY57386
CDY58875
CDY60440

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07120.1	CDX98906	AT5G06140.1	21156856
AT5G07120.1	CDY60440	AT5G06140.1	21156856
AT5G07120.1	CDX70009	AT5G07120.1	21156856
AT5G07120.1	CDX81034	AT5G07120.1	21156856
AT5G07120.1	CDX99005	AT5G07120.1	21156856
AT5G07120.1	CDY58875	AT5G07120.1	21156856
AT5G07120.1	CDY32985	AT5G58440.1	21156856
AT5G07120.1	CDY57386	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005925.1-P	Field mustard	cytosol	97.47	97.47
CDX81034	Canola	cytosol	89.11	92.15
CDX99005	Canola	cytosol	77.43	73.84
CDX70009	Canola	cytosol	76.07	73.08
CDY57386	Canola	cytosol	74.71	68.69
AT5G07120.1	Thale cress	cytosol	75.29	67.66
CDY32985	Canola	cytosol	66.93	66.54
Solyc09g031590.2.1	Tomato	cytosol	4.28	64.71
KRH72755	Soybean	cytosol, endoplasmic reticulum	66.34	61.11
VIT_06s0004g07430.t01	Wine grape	cytosol	65.95	60.97
KRH17110	Soybean	cytosol	66.34	60.78
GSMUA_Achr8P21250_001	Banana	cytosol	61.28	57.59
GSMUA_Achr10P...	Banana	cytosol	56.23	56.89
GSMUA_Achr3P10000_001	Banana	mitochondrion	56.03	53.23
Os05t0346100-01	Rice	plasma membrane	55.84	53.15
TraesCS1B01G235000.1	Wheat	cytosol, plastid	54.28	52.64
TraesCS1D01G223500.1	Wheat	cytosol, plastid	54.28	52.64
TraesCS1A01G221800.1	Wheat	cytosol, plastid	53.89	52.26
GSMUA_Achr11P...	Banana	nucleus	52.14	50.95
EES18029	Sorghum	cytosol	53.31	49.82
Zm00001d038007_P001	Maize	extracellular	53.5	49.73
HORVU1Hr1G060480.2	Barley	plastid	53.89	47.19
Os01t0827200-01	Rice	cytosol, extracellular	41.05	41.87
Zm00001d043022_P001	Maize	cytosol	41.44	41.68
TraesCS1B01G307500.1	Wheat	cytosol	40.66	40.43
OQU87773	Sorghum	cytosol	40.27	40.27
Zm00001d010604_P008	Maize	cytosol, plastid	39.3	39.61
TraesCS1A01G298000.1	Wheat	cytosol	39.69	39.53
TraesCS1D01G293200.1	Wheat	cytosol	39.3	39.22
OQU78173	Sorghum	cytosol	34.24	38.77
TraesCS3A01G347900.1	Wheat	cytosol	38.52	38.75
TraesCS3B01G379800.1	Wheat	cytosol	38.33	38.55
TraesCS3D01G341500.1	Wheat	cytosol	38.13	38.36
CDX98906	Canola	cytosol	20.43	26.92
CDY60440	Canola	cytosol	20.23	26.67
Zm00001d038449_P001	Maize	cytosol	38.13	25.99
CDY00386	Canola	nucleus	12.45	10.65

Protein Annotations

Gene3D:1.20.1270.60	MapMan:22.5.5.3.6	Gene3D:3.30.1520.10	GO:A0A078J4K1	UniProt:A0A078J4K1	InterPro:AH/BAR_dom_sf
EnsemblPlants:CDY58875	ProteinID:CDY58875	ProteinID:CDY58875.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0008289	GO:GO:0035091	EnsemblPlantsGene:GSBRNA2T00025281001	InterPro:IPR001683	InterPro:IPR027267	InterPro:IPR036871
PFAM:PF00787	PFAM:PF09325	PFscan:PS50195	PANTHER:PTHR10555	PANTHER:PTHR10555:SF201	InterPro:PX_dom_sf
InterPro:Phox	SMART:SM00312	SUPFAM:SSF103657	SUPFAM:SSF64268	UniParc:UPI0004EE2D53	InterPro:Vps5_C
SEG:seg	:	:	:	:	:

Description

BnaA03g55530DBnaA03g55530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J4K1]

Coordinates

chrLK033708:+:11692..13874

Molecular Weight (calculated)

57425.8 Da

IEP (calculated)

5.268

GRAVY (calculated)

-0.521

Length

514 amino acids

Sequence
(BLAST)

001: MMGSENDEDS HLHASKEEME SLFLRDGNGS HNLSPPPIIV TPADSDPLSL PPNGGTSYIE PPSYADVVFS PFDDSDDSSD TLSRSPSSSS SSDYIKITVS
101: SPQKEQETAS SMLSGGSTYV TYLITTRTNL PEYKGSDFTV RRRFRDVVAL GDRLAESYKG FCIPPRPDKS VVESQVMQRQ EFVEQRRVAL EKYLRRLAAH
201: PVIRCSDELK VFLQVEGKLP LTLQMGTGVA SRVLDGGVSV VEVAQPARSG RDLFRLFKEL RQSVSNDWGG VRPAVVEEDK EFLVRKEKMH DLEKEIINAS
301: QQAETLVKAQ QDMGETMGEL GLAFIKLTKF ENEEAVFNSQ RARANDMKNL ATAAVKASRF YRELNSQTVK HLDTLHDYLG VMMAVQGAFA DRASALLTVQ
401: TLLSEVSSLE GRAEKLEAAS SKVFGGDKSR IKKIEELKEI IKATEDAKNV AIRDYERIKE NNRSEVERLD RERRADFLNM MKGFVVNQVG YAEKMANVWA
501: KVAEETSQYN RESS

Best Arabidopsis Sequence Match ( AT5G07120.2 )
(BLAST)

001: MMGSENDEES HLHSSKEEME KLFLREDGDP LTKSNVNGDK SNSNYRSAMS TLFDSRHPSI VVTPADSDPL FAPPSYYSES RSPRSKPNGG DRVSSYLEPP
101: SYADVIFSPF DDISEINGSE DGHSQSSDSL SRSPSSLSSD YIKITVSNPQ KEQEATNSMI PGGSTYITYQ ITTRTNLSDY GGSEFSVRRR FRDIVTLADR
201: LAESYRGFCI PPRPDKSIVE SQVMQKQEFV EQRRVALEKY LRRLVAHPVI RNSDELKVFL QAQGKLPLAT STDVASRMLD GAVKLPKQLF GEGGGASSVE
301: VVQPGRGGRD FLRMFKELRQ SVSNDWGGSK PPVVEEDKEF LEKKEKMYDL EQQIINASQQ AESLVKAQQD MGETMGELGL AFIKLTKFEN EEAVFNSQRA
401: RANDMKNLAT SAVKASRFYR ELNSQTVKHL DTLHDYLGLM MAVQGAFADR SSALLTVQTL LSELSSLEAR AEKLEVASSK VFGGDKSRIK KIEELKETIK
501: VTEDSKNVAI REYEQIKENN WSEVERLDRE RRADFLNMMK GFVANQVGYA EKIANVWTKV AEETRQYDRE SS

Arabidopsis Description

SNX2BSorting nexin 2B [Source:UniProtKB/Swiss-Prot;Acc:B9DFS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.