CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70009
CDX81034
CDX98906
CDX99005
CDY32985
CDY57386
CDY58875
CDY60440

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58440.1	CDX98906	AT5G06140.1	21156856
AT5G58440.1	CDY60440	AT5G06140.1	21156856
AT5G58440.1	CDX70009	AT5G07120.1	21156856
AT5G58440.1	CDX81034	AT5G07120.1	21156856
AT5G58440.1	CDX99005	AT5G07120.1	21156856
AT5G58440.1	CDY58875	AT5G07120.1	21156856
AT5G58440.1	CDY32985	AT5G58440.1	21156856
AT5G58440.1	CDY57386	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002651.1-P	Field mustard	cytosol	95.16	88.49
CDY57386	Canola	cytosol	86.46	79.96
AT5G58440.1	Thale cress	cytosol	78.34	68.99
CDX81034	Canola	cytosol	66.15	68.81
CDY58875	Canola	cytosol	66.54	66.93
CDX99005	Canola	cytosol	69.25	66.42
CDX70009	Canola	cytosol	68.47	66.17
Solyc09g031590.2.1	Tomato	cytosol	3.87	58.82
VIT_06s0004g07430.t01	Wine grape	cytosol	62.67	58.27
KRH72755	Soybean	cytosol, endoplasmic reticulum	61.51	56.99
KRH17110	Soybean	cytosol	61.51	56.68
GSMUA_Achr8P21250_001	Banana	cytosol	57.25	54.11
GSMUA_Achr10P...	Banana	cytosol	51.26	52.17
GSMUA_Achr3P10000_001	Banana	mitochondrion	52.8	50.46
TraesCS1B01G235000.1	Wheat	cytosol, plastid	50.87	49.62
TraesCS1D01G223500.1	Wheat	cytosol, plastid	50.1	48.87
Os05t0346100-01	Rice	plasma membrane	50.68	48.52
GSMUA_Achr11P...	Banana	nucleus	49.32	48.48
TraesCS1A01G221800.1	Wheat	cytosol, plastid	49.32	48.11
Zm00001d038007_P001	Maize	extracellular	49.13	45.93
EES18029	Sorghum	cytosol	48.74	45.82
HORVU1Hr1G060480.2	Barley	plastid	49.9	43.95
TraesCS1B01G307500.1	Wheat	cytosol	39.07	39.07
Zm00001d010604_P008	Maize	cytosol, plastid	37.72	38.24
TraesCS1A01G298000.1	Wheat	cytosol	38.1	38.18
Os01t0827200-01	Rice	cytosol, extracellular	37.14	38.1
TraesCS3B01G379800.1	Wheat	cytosol	37.14	37.57
TraesCS1D01G293200.1	Wheat	cytosol	37.33	37.48
TraesCS3D01G341500.1	Wheat	cytosol	36.94	37.38
Zm00001d043022_P001	Maize	cytosol	36.94	37.38
TraesCS3A01G347900.1	Wheat	cytosol	36.94	37.38
OQU78173	Sorghum	cytosol	32.69	37.22
OQU87773	Sorghum	cytosol	35.98	36.19
Zm00001d038449_P001	Maize	cytosol	37.52	25.73
CDX98906	Canola	cytosol	17.8	23.59
CDY60440	Canola	cytosol	17.6	23.33
CDY00386	Canola	nucleus	10.06	8.65

Protein Annotations

Gene3D:1.20.1270.60	MapMan:22.5.5.3.6	Gene3D:3.30.1520.10	GO:A0A078H304	UniProt:A0A078H304	InterPro:AH/BAR_dom_sf
EnsemblPlants:CDY32985	ProteinID:CDY32985	ProteinID:CDY32985.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0008289	GO:GO:0035091	EnsemblPlantsGene:GSBRNA2T00053203001	InterPro:IPR001683	InterPro:IPR027267	InterPro:IPR036871
PFAM:PF00787	PFAM:PF09325	PFscan:PS50195	PANTHER:PTHR10555	PANTHER:PTHR10555:SF201	InterPro:PX_dom_sf
InterPro:Phox	SMART:SM00312	SUPFAM:SSF64268	UniParc:UPI0004EEA7B8	InterPro:Vps5_C	SEG:seg

Description

BnaA10g11910DBnaA10g11910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H304]

Coordinates

chrLK032304:+:55266..57795

Molecular Weight (calculated)

57586.7 Da

IEP (calculated)

4.868

GRAVY (calculated)

-0.578

Length

517 amino acids

Sequence
(BLAST)

001: MMGSENADVF EETNLNAAKE EMENLVLNGS DVNGDSSNSA YRSAMSTLSN VHDPLSPLPT VLTPADSDPL TAPSSYIEPP SYADVIFSPF DETSDSEING
101: GEDSSLSPDS LSRSPSSSSS DYIKITVSNP QKEQETSNSI VGGNTYITYQ ITTRTNLPDF GVSESSVRRR FRDVVTLADR LAESYRGFCI PPRPDKSVVE
201: SQVMQKQEFV EQRRVALEKY LRRLSAHPVI RKSDELKVFL QVQGKLPLPM STDLPKQLFG EGGASAVPVH EVVQPARGED KEFLEKKEKM LDLEQQIINS
301: SQQAESLVKA QQDMGETMGE LGLAFIKLTK FENEEAVFNS QRTRATDMKN LATAAVKASR FYRELNSQTV KHLDTLHEYL GMMMAVQGAF ADRSSALLTV
401: QTLLSELSSL QARAEKLEAA SSKVFGGDKS RIRKIEELKE TIKVTEDAKN VAIREYERIK DNNRSEVERL DGERRADFMN MMKGFVVNQV GYAKKISNVW
501: AKAAEETSQY DREKQSS

Best Arabidopsis Sequence Match ( AT5G58440.1 )
(BLAST)

001: MMGSENADGF EETNLNAQRD DMENLDLGVD GGDHPLKISD VNGDTSNSGY RSAMSTLSNV RDPLSPPPTV MIPADSDPLL APSSYEDFRS SFSSKPISSD
101: NSYIEPPSYA DVIFSPFDEN SDSEINGTED NSLHSQFSDS LSRSPSSSSS DYIKITVSNP QKEQEISNSI VGGNTYITYQ ITTRTNLPDF GGPSEFSVRR
201: RFRDVVTLAD RLAETYRGFC IPPRPDKSVV ESQVMQKQEF VEQRRVALEK YLRRLSAHPV IRNSDELKVF LQVQGKLPLP MSTDVASRML DGAVKLPKQL
301: FGEGGASAVP VTEVGQPARG GRDLLRLFKE LRQSVSNDWG GSKPPVVEED KEFLEKKEKM HDLEQQIINA SQQAESLVKA QQDMGETMGE LGLAFIKLTK
401: FENEEAVCNP QRTRANDMKN LATAAVKASR FYRELNSQTV KHLDTLHEYL GMMMAVQGAF ADRSSALLTV QTLLSELPSL QTRVEKLEAA SSKVFGGDKS
501: RIRKIEELKE TIKVTEDAKN VAIKGYERIK ENNRSEVERL DRERRADFMN MMKGFVVNQV GYAEKMGNVW AKVAEETSQY DREKQSS

Arabidopsis Description

SNX2ASNX2a [Source:UniProtKB/TrEMBL;Acc:A0A178UPE2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.