Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G298000.1 | Wheat | cytosol | 87.62 | 87.79 |
| TraesCS1D01G293200.1 | Wheat | cytosol | 86.27 | 86.6 |
| Zm00001d010604_P008 | Maize | cytosol, plastid | 67.89 | 68.82 |
| OQU78173 | Sorghum | cytosol | 60.35 | 68.72 |
| TraesCS3B01G379800.1 | Wheat | cytosol | 56.29 | 56.95 |
| Solyc09g031590.2.1 | Tomato | cytosol | 3.09 | 47.06 |
| Zm00001d038449_P001 | Maize | cytosol | 67.31 | 46.15 |
| CDX81034 | Canola | cytosol | 40.43 | 42.05 |
| GSMUA_Achr11P... | Banana | nucleus | 42.75 | 42.02 |
| Bra005925.1-P | Field mustard | cytosol | 41.01 | 41.25 |
| CDY58875 | Canola | cytosol | 40.43 | 40.66 |
| TraesCS1B01G235000.1 | Wheat | cytosol, plastid | 41.01 | 40.0 |
| VIT_06s0004g07430.t01 | Wine grape | cytosol | 42.75 | 39.75 |
| KRH14903 | Soybean | cytosol | 39.65 | 39.42 |
| CDY32985 | Canola | cytosol | 39.07 | 39.07 |
| Solyc06g050550.2.1 | Tomato | plastid | 40.81 | 39.0 |
| PGSC0003DMT400061516 | Potato | cytosol | 40.62 | 38.82 |
| CDX70009 | Canola | cytosol | 39.85 | 38.5 |
| Bra002651.1-P | Field mustard | cytosol | 41.39 | 38.49 |
| KRH72755 | Soybean | cytosol, endoplasmic reticulum | 41.39 | 38.35 |
| CDY57386 | Canola | cytosol | 41.39 | 38.28 |
| CDX99005 | Canola | cytosol | 39.85 | 38.22 |
| VIT_13s0067g01990.t01 | Wine grape | cytosol | 41.39 | 38.21 |
| KRH73242 | Soybean | cytosol | 38.68 | 38.17 |
| Bra009291.1-P | Field mustard | cytosol | 39.27 | 37.8 |
| KRH17110 | Soybean | cytosol | 40.23 | 37.08 |
| AT5G07120.1 | Thale cress | cytosol | 41.01 | 37.06 |
| AT5G58440.1 | Thale cress | cytosol | 41.2 | 36.29 |
| Solyc09g031600.2.1 | Tomato | cytosol | 33.08 | 36.15 |
| TraesCS3B01G407400.2 | Wheat | cytosol, plastid | 17.99 | 23.25 |
Protein Annotations
| Gene3D:1.20.1270.60 | MapMan:22.5.5.3.6 | Gene3D:3.30.1520.10 | InterPro:AH/BAR_dom_sf | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0008289 | GO:GO:0035091 | InterPro:IPR001683 | InterPro:IPR027267 | InterPro:IPR036871 |
| PFAM:PF00787 | PFAM:PF09325 | PFscan:PS50195 | PANTHER:PTHR10555 | PANTHER:PTHR10555:SF146 | InterPro:PX_dom_sf |
| InterPro:Phox | SMART:SM00312 | SUPFAM:SSF64268 | EnsemblPlantsGene:TraesCS1B01G307500 | EnsemblPlants:TraesCS1B01G307500.1 | InterPro:Vps5_C |
| TIGR:cd07596 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1B:+:530466814..530473014
Molecular Weight (calculated)
57041.0 Da
IEP (calculated)
6.624
GRAVY (calculated)
-0.480
Length
517 amino acids
Sequence
(BLAST)
(BLAST)
001: MMAAEPSSPS ATASAAADDL ETLALDSSHS SPAAATDPLL RPPSSSSNGA AATRHEPFVI DDFLDDDEDE EDDDHAPPPL PAARAPAAAA ANGEAGPEFS
101: RITVSDPKKH AEPVSGAAGV IPGSGSYFSY LVTTRLADGA AEVRVRRRFR DVVALADRLA AAHRGLFVPA RPDKSLVEGQ VMQRHDFVSQ RCTALQRYLR
201: RLAAHPVVGR SPDLRTFLTE PGAIAAFQGE APRHWTTTVN AAIPTVPAKA GRDLFGMFKD LKQTVVNGLV ATKPPPVEEE TDTEFLSHKS RLEDLQQQLT
301: TTSQQAESLV KAQDDLRTTT AHLGMTLIKL AKFEREQATC NSERRRAGVI QHFANSVVKF SRSQAKLNSE VVQQLDTIHE YLEMMISVNH AFTDRSNALQ
401: HVQSLSADLF FLHTRAGRLE SVSSRGIGQE WTRYQKIEGL KETISTREGV KNQVLREYES IKENNMTEIK RFDKDRRRDL IEMLKGFVIN QVSYSDHFAN
501: MWGKVAEETR VYANRSN
101: RITVSDPKKH AEPVSGAAGV IPGSGSYFSY LVTTRLADGA AEVRVRRRFR DVVALADRLA AAHRGLFVPA RPDKSLVEGQ VMQRHDFVSQ RCTALQRYLR
201: RLAAHPVVGR SPDLRTFLTE PGAIAAFQGE APRHWTTTVN AAIPTVPAKA GRDLFGMFKD LKQTVVNGLV ATKPPPVEEE TDTEFLSHKS RLEDLQQQLT
301: TTSQQAESLV KAQDDLRTTT AHLGMTLIKL AKFEREQATC NSERRRAGVI QHFANSVVKF SRSQAKLNSE VVQQLDTIHE YLEMMISVNH AFTDRSNALQ
401: HVQSLSADLF FLHTRAGRLE SVSSRGIGQE WTRYQKIEGL KETISTREGV KNQVLREYES IKENNMTEIK RFDKDRRRDL IEMLKGFVIN QVSYSDHFAN
501: MWGKVAEETR VYANRSN
001: MMGSENDEES HLHSSKEEME KLFLREDGDP LTKSNVNGDK SNSNYRSAMS TLFDSRHPSI VVTPADSDPL FAPPSYYSES RSPRSKPNGG DRVSSYLEPP
101: SYADVIFSPF DDISEINGSE DGHSQSSDSL SRSPSSLSSD YIKITVSNPQ KEQEATNSMI PGGSTYITYQ ITTRTNLSDY GGSEFSVRRR FRDIVTLADR
201: LAESYRGFCI PPRPDKSIVE SQVMQKQEFV EQRRVALEKY LRRLVAHPVI RNSDELKVFL QAQGKLPLAT STDVASRMLD GAVKLPKQLF GEGGGASSVE
301: VVQPGRGGRD FLRMFKELRQ SVSNDWGGSK PPVVEEDKEF LEKKEKMYDL EQQIINASQQ AESLVKAQQD MGETMGELGL AFIKLTKFEN EEAVFNSQRA
401: RANDMKNLAT SAVKASRFYR ELNSQTVKHL DTLHDYLGLM MAVQGAFADR SSALLTVQTL LSELSSLEAR AEKLEVASSK VFGGDKSRIK KIEELKETIK
501: VTEDSKNVAI REYEQIKENN WSEVERLDRE RRADFLNMMK GFVANQVGYA EKIANVWTKV AEETRQYDRE SS
101: SYADVIFSPF DDISEINGSE DGHSQSSDSL SRSPSSLSSD YIKITVSNPQ KEQEATNSMI PGGSTYITYQ ITTRTNLSDY GGSEFSVRRR FRDIVTLADR
201: LAESYRGFCI PPRPDKSIVE SQVMQKQEFV EQRRVALEKY LRRLVAHPVI RNSDELKVFL QAQGKLPLAT STDVASRMLD GAVKLPKQLF GEGGGASSVE
301: VVQPGRGGRD FLRMFKELRQ SVSNDWGGSK PPVVEEDKEF LEKKEKMYDL EQQIINASQQ AESLVKAQQD MGETMGELGL AFIKLTKFEN EEAVFNSQRA
401: RANDMKNLAT SAVKASRFYR ELNSQTVKHL DTLHDYLGLM MAVQGAFADR SSALLTVQTL LSELSSLEAR AEKLEVASSK VFGGDKSRIK KIEELKETIK
501: VTEDSKNVAI REYEQIKENN WSEVERLDRE RRADFLNMMK GFVANQVGYA EKIANVWTKV AEETRQYDRE SS
Arabidopsis Description
SNX2BSorting nexin 2B [Source:UniProtKB/Swiss-Prot;Acc:B9DFS6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.