Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22908117
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400061516 | Potato | cytosol | 96.49 | 96.49 |
KRH14903 | Soybean | cytosol | 66.17 | 68.85 |
VIT_13s0067g01990.t01 | Wine grape | cytosol | 69.87 | 67.5 |
KRH73242 | Soybean | cytosol | 64.88 | 66.98 |
GSMUA_Achr8P21250_001 | Banana | cytosol | 63.03 | 62.34 |
GSMUA_Achr10P... | Banana | cytosol | 57.67 | 61.42 |
GSMUA_Achr3P10000_001 | Banana | mitochondrion | 58.78 | 58.78 |
Solyc09g031600.2.1 | Tomato | cytosol | 49.91 | 57.08 |
TraesCS1D01G223500.1 | Wheat | cytosol, plastid | 55.82 | 56.98 |
TraesCS1B01G235000.1 | Wheat | cytosol, plastid | 55.64 | 56.79 |
Os05t0346100-01 | Rice | plasma membrane | 56.01 | 56.11 |
TraesCS1A01G221800.1 | Wheat | cytosol, plastid | 54.9 | 56.04 |
GSMUA_Achr11P... | Banana | nucleus | 53.42 | 54.94 |
EES18029 | Sorghum | cytosol | 55.45 | 54.55 |
Zm00001d038007_P001 | Maize | extracellular | 55.45 | 54.25 |
HORVU1Hr1G060480.2 | Barley | plastid | 55.45 | 51.11 |
Solyc09g031590.2.1 | Tomato | cytosol | 2.77 | 44.12 |
OQU87773 | Sorghum | cytosol | 41.22 | 43.39 |
Os01t0827200-01 | Rice | cytosol, extracellular | 40.11 | 43.06 |
TraesCS3B01G379800.1 | Wheat | cytosol | 40.11 | 42.47 |
Zm00001d043022_P001 | Maize | cytosol | 39.93 | 42.27 |
TraesCS3A01G347900.1 | Wheat | cytosol | 39.93 | 42.27 |
Zm00001d010604_P008 | Maize | cytosol, plastid | 39.74 | 42.16 |
TraesCS3D01G341500.1 | Wheat | cytosol | 39.56 | 41.88 |
TraesCS1B01G307500.1 | Wheat | cytosol | 39.0 | 40.81 |
TraesCS1D01G293200.1 | Wheat | cytosol | 38.82 | 40.78 |
OQU78173 | Sorghum | cytosol | 34.2 | 40.75 |
TraesCS1A01G298000.1 | Wheat | cytosol | 38.26 | 40.12 |
Zm00001d038449_P001 | Maize | cytosol | 38.63 | 27.72 |
Solyc09g010130.2.1 | Tomato | plastid | 11.28 | 20.68 |
Protein Annotations
Gene3D:1.20.1270.60 | MapMan:22.5.5.3.6 | Gene3D:3.30.1520.10 | InterPro:AH/BAR_dom_sf | ncoils:Coil | GO:GO:0003674 |
GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 |
GO:GO:0006810 | GO:GO:0006897 | GO:GO:0008150 | GO:GO:0008289 | GO:GO:0009987 | GO:GO:0016020 |
GO:GO:0016043 | GO:GO:0016050 | GO:GO:0019898 | GO:GO:0035091 | InterPro:IPR001683 | InterPro:IPR027267 |
InterPro:IPR036871 | UniProt:K4C5J9 | PFAM:PF00787 | PFAM:PF09325 | PFscan:PS50195 | PANTHER:PTHR10555 |
PANTHER:PTHR10555:SF201 | InterPro:PX_dom_sf | InterPro:Phox | SMART:SM00312 | SUPFAM:SSF103657 | SUPFAM:SSF64268 |
EnsemblPlantsGene:Solyc06g050550.2 | EnsemblPlants:Solyc06g050550.2.1 | UniParc:UPI0002766B1F | InterPro:Vps5_C | SEG:seg | : |
Description
No Description!
Coordinates
chr6:+:33252630..33260062
Molecular Weight (calculated)
60659.4 Da
IEP (calculated)
5.733
GRAVY (calculated)
-0.589
Length
541 amino acids
Sequence
(BLAST)
(BLAST)
001: MMGYENQESH LYASKKEMES LVLDDDSPNG TSHPFSDPLS SSSSLPFAEI PTDQGQTPNS SFNSILEPPS YAEAIFRSFD ADHSSPQLNG AHDHSIASPS
101: SLPSSDDFLT ITVSDPQKEQ ELSNSLVPGG TAYVTYLITT RTNLPEFDGT EFSVRRRFRD VVTLSDRLAE SYRGFFIPIR PDKSVVESQV MQKQEFVEQR
201: RAALEKYLRR LAAHPVIRRS EELRMFLEAN GKLPLVRTTD VASRMLDGAV QLPKQIFGET AGGMVDANEV AQPAKGGRDL LRIFRELKQS VSNDWGGVKP
301: PVVEEDKELL EKKQKLHDFE QQLSNVSQQA EALVKSQQDI GETMGQMGLA FVKLTKFETE RAVYDSQRTR AADMKNVATA SVKASRLYRE LNAQTVKHLD
401: KLHEYLGVML AVNNAFSDRS SALLTVQTLL SELSSLNSRI EKLEAAASKI FGGDRARIRK IEELKETHRE TEDAKSSAVR EYERIKENNK SELARFEKER
501: RDDFLGMLRG FVVNQAGYAE KMANVWETVA DETKGYAKHG S
101: SLPSSDDFLT ITVSDPQKEQ ELSNSLVPGG TAYVTYLITT RTNLPEFDGT EFSVRRRFRD VVTLSDRLAE SYRGFFIPIR PDKSVVESQV MQKQEFVEQR
201: RAALEKYLRR LAAHPVIRRS EELRMFLEAN GKLPLVRTTD VASRMLDGAV QLPKQIFGET AGGMVDANEV AQPAKGGRDL LRIFRELKQS VSNDWGGVKP
301: PVVEEDKELL EKKQKLHDFE QQLSNVSQQA EALVKSQQDI GETMGQMGLA FVKLTKFETE RAVYDSQRTR AADMKNVATA SVKASRLYRE LNAQTVKHLD
401: KLHEYLGVML AVNNAFSDRS SALLTVQTLL SELSSLNSRI EKLEAAASKI FGGDRARIRK IEELKETHRE TEDAKSSAVR EYERIKENNK SELARFEKER
501: RDDFLGMLRG FVVNQAGYAE KMANVWETVA DETKGYAKHG S
001: MMGSENADGF EETNLNAQRD DMENLDLGVD GGDHPLKISD VNGDTSNSGY RSAMSTLSNV RDPLSPPPTV MIPADSDPLL APSSYEDFRS SFSSKPISSD
101: NSYIEPPSYA DVIFSPFDEN SDSEINGTED NSLHSQFSDS LSRSPSSSSS DYIKITVSNP QKEQEISNSI VGGNTYITYQ ITTRTNLPDF GGPSEFSVRR
201: RFRDVVTLAD RLAETYRGFC IPPRPDKSVV ESQVMQKQEF VEQRRVALEK YLRRLSAHPV IRNSDELKVF LQVQGKLPLP MSTDVASRML DGAVKLPKQL
301: FGEGGASAVP VTEVGQPARG GRDLLRLFKE LRQSVSNDWG GSKPPVVEED KEFLEKKEKM HDLEQQIINA SQQAESLVKA QQDMGETMGE LGLAFIKLTK
401: FENEEAVCNP QRTRANDMKN LATAAVKASR FYRELNSQTV KHLDTLHEYL GMMMAVQGAF ADRSSALLTV QTLLSELPSL QTRVEKLEAA SSKVFGGDKS
501: RIRKIEELKE TIKVTEDAKN VAIKGYERIK ENNRSEVERL DRERRADFMN MMKGFVVNQV GYAEKMGNVW AKVAEETSQY DREKQSS
101: NSYIEPPSYA DVIFSPFDEN SDSEINGTED NSLHSQFSDS LSRSPSSSSS DYIKITVSNP QKEQEISNSI VGGNTYITYQ ITTRTNLPDF GGPSEFSVRR
201: RFRDVVTLAD RLAETYRGFC IPPRPDKSVV ESQVMQKQEF VEQRRVALEK YLRRLSAHPV IRNSDELKVF LQVQGKLPLP MSTDVASRML DGAVKLPKQL
301: FGEGGASAVP VTEVGQPARG GRDLLRLFKE LRQSVSNDWG GSKPPVVEED KEFLEKKEKM HDLEQQIINA SQQAESLVKA QQDMGETMGE LGLAFIKLTK
401: FENEEAVCNP QRTRANDMKN LATAAVKASR FYRELNSQTV KHLDTLHEYL GMMMAVQGAF ADRSSALLTV QTLLSELPSL QTRVEKLEAA SSKVFGGDKS
501: RIRKIEELKE TIKVTEDAKN VAIKGYERIK ENNRSEVERL DRERRADFMN MMKGFVVNQV GYAEKMGNVW AKVAEETSQY DREKQSS
Arabidopsis Description
SNX2ASNX2a [Source:UniProtKB/TrEMBL;Acc:A0A178UPE2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.