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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:mitochondrion
YLoc:cytosol
plastid: 22908117
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400061516 Potato cytosol 96.49 96.49
KRH14903 Soybean cytosol 66.17 68.85
VIT_13s0067g01990.t01 Wine grape cytosol 69.87 67.5
KRH73242 Soybean cytosol 64.88 66.98
GSMUA_Achr8P21250_001 Banana cytosol 63.03 62.34
GSMUA_Achr10P... Banana cytosol 57.67 61.42
GSMUA_Achr3P10000_001 Banana mitochondrion 58.78 58.78
Solyc09g031600.2.1 Tomato cytosol 49.91 57.08
TraesCS1D01G223500.1 Wheat cytosol, plastid 55.82 56.98
TraesCS1B01G235000.1 Wheat cytosol, plastid 55.64 56.79
Os05t0346100-01 Rice plasma membrane 56.01 56.11
TraesCS1A01G221800.1 Wheat cytosol, plastid 54.9 56.04
GSMUA_Achr11P... Banana nucleus 53.42 54.94
EES18029 Sorghum cytosol 55.45 54.55
Zm00001d038007_P001 Maize extracellular 55.45 54.25
HORVU1Hr1G060480.2 Barley plastid 55.45 51.11
Solyc09g031590.2.1 Tomato cytosol 2.77 44.12
OQU87773 Sorghum cytosol 41.22 43.39
Os01t0827200-01 Rice cytosol, extracellular 40.11 43.06
TraesCS3B01G379800.1 Wheat cytosol 40.11 42.47
Zm00001d043022_P001 Maize cytosol 39.93 42.27
TraesCS3A01G347900.1 Wheat cytosol 39.93 42.27
Zm00001d010604_P008 Maize cytosol, plastid 39.74 42.16
TraesCS3D01G341500.1 Wheat cytosol 39.56 41.88
TraesCS1B01G307500.1 Wheat cytosol 39.0 40.81
TraesCS1D01G293200.1 Wheat cytosol 38.82 40.78
OQU78173 Sorghum cytosol 34.2 40.75
TraesCS1A01G298000.1 Wheat cytosol 38.26 40.12
Zm00001d038449_P001 Maize cytosol 38.63 27.72
Solyc09g010130.2.1 Tomato plastid 11.28 20.68
Protein Annotations
Gene3D:1.20.1270.60MapMan:22.5.5.3.6Gene3D:3.30.1520.10InterPro:AH/BAR_dom_sfncoils:CoilGO:GO:0003674
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005768
GO:GO:0006810GO:GO:0006897GO:GO:0008150GO:GO:0008289GO:GO:0009987GO:GO:0016020
GO:GO:0016043GO:GO:0016050GO:GO:0019898GO:GO:0035091InterPro:IPR001683InterPro:IPR027267
InterPro:IPR036871UniProt:K4C5J9PFAM:PF00787PFAM:PF09325PFscan:PS50195PANTHER:PTHR10555
PANTHER:PTHR10555:SF201InterPro:PX_dom_sfInterPro:PhoxSMART:SM00312SUPFAM:SSF103657SUPFAM:SSF64268
EnsemblPlantsGene:Solyc06g050550.2EnsemblPlants:Solyc06g050550.2.1UniParc:UPI0002766B1FInterPro:Vps5_CSEG:seg:
Description
No Description!
Coordinates
chr6:+:33252630..33260062
Molecular Weight (calculated)
60659.4 Da
IEP (calculated)
5.733
GRAVY (calculated)
-0.589
Length
541 amino acids
Sequence
(BLAST)
001: MMGYENQESH LYASKKEMES LVLDDDSPNG TSHPFSDPLS SSSSLPFAEI PTDQGQTPNS SFNSILEPPS YAEAIFRSFD ADHSSPQLNG AHDHSIASPS
101: SLPSSDDFLT ITVSDPQKEQ ELSNSLVPGG TAYVTYLITT RTNLPEFDGT EFSVRRRFRD VVTLSDRLAE SYRGFFIPIR PDKSVVESQV MQKQEFVEQR
201: RAALEKYLRR LAAHPVIRRS EELRMFLEAN GKLPLVRTTD VASRMLDGAV QLPKQIFGET AGGMVDANEV AQPAKGGRDL LRIFRELKQS VSNDWGGVKP
301: PVVEEDKELL EKKQKLHDFE QQLSNVSQQA EALVKSQQDI GETMGQMGLA FVKLTKFETE RAVYDSQRTR AADMKNVATA SVKASRLYRE LNAQTVKHLD
401: KLHEYLGVML AVNNAFSDRS SALLTVQTLL SELSSLNSRI EKLEAAASKI FGGDRARIRK IEELKETHRE TEDAKSSAVR EYERIKENNK SELARFEKER
501: RDDFLGMLRG FVVNQAGYAE KMANVWETVA DETKGYAKHG S
Best Arabidopsis Sequence Match ( AT5G58440.1 )
(BLAST)
001: MMGSENADGF EETNLNAQRD DMENLDLGVD GGDHPLKISD VNGDTSNSGY RSAMSTLSNV RDPLSPPPTV MIPADSDPLL APSSYEDFRS SFSSKPISSD
101: NSYIEPPSYA DVIFSPFDEN SDSEINGTED NSLHSQFSDS LSRSPSSSSS DYIKITVSNP QKEQEISNSI VGGNTYITYQ ITTRTNLPDF GGPSEFSVRR
201: RFRDVVTLAD RLAETYRGFC IPPRPDKSVV ESQVMQKQEF VEQRRVALEK YLRRLSAHPV IRNSDELKVF LQVQGKLPLP MSTDVASRML DGAVKLPKQL
301: FGEGGASAVP VTEVGQPARG GRDLLRLFKE LRQSVSNDWG GSKPPVVEED KEFLEKKEKM HDLEQQIINA SQQAESLVKA QQDMGETMGE LGLAFIKLTK
401: FENEEAVCNP QRTRANDMKN LATAAVKASR FYRELNSQTV KHLDTLHEYL GMMMAVQGAF ADRSSALLTV QTLLSELPSL QTRVEKLEAA SSKVFGGDKS
501: RIRKIEELKE TIKVTEDAKN VAIKGYERIK ENNRSEVERL DRERRADFMN MMKGFVVNQV GYAEKMGNVW AKVAEETSQY DREKQSS
Arabidopsis Description
SNX2ASNX2a [Source:UniProtKB/TrEMBL;Acc:A0A178UPE2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.