Factsheet for Zm00001d043022_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010604_P008
Zm00001d012286_P001
Zm00001d038007_P001
Zm00001d038449_P001
Zm00001d042761_P001
Zm00001d043022_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07120.1	Zm00001d012286_P001	AT5G06140.1	21156856
AT5G07120.1	Zm00001d042761_P001	AT5G06140.1	21156856
AT5G07120.1	Zm00001d010604_P008	AT5G07120.1	21156856
AT5G07120.1	Zm00001d038007_P001	AT5G07120.1	21156856
AT5G07120.1	Zm00001d038449_P001	AT5G07120.1	21156856
AT5G07120.1	Zm00001d043022_P001	AT5G07120.1	21156856
AT5G07120.1	Zm00001d010604_P008	AT5G58440.1	21156856
AT5G07120.1	Zm00001d038007_P001	AT5G58440.1	21156856
AT5G07120.1	Zm00001d038449_P001	AT5G58440.1	21156856
AT5G07120.1	Zm00001d043022_P001	AT5G58440.1	21156856
AT5G58440.1	Zm00001d012286_P001	AT5G06140.1	21156856
AT5G58440.1	Zm00001d042761_P001	AT5G06140.1	21156856
AT5G58440.1	Zm00001d010604_P008	AT5G07120.1	21156856
AT5G58440.1	Zm00001d038007_P001	AT5G07120.1	21156856
AT5G58440.1	Zm00001d038449_P001	AT5G07120.1	21156856
AT5G58440.1	Zm00001d043022_P001	AT5G07120.1	21156856
AT5G58440.1	Zm00001d010604_P008	AT5G58440.1	21156856
AT5G58440.1	Zm00001d038007_P001	AT5G58440.1	21156856
AT5G58440.1	Zm00001d038449_P001	AT5G58440.1	21156856
AT5G58440.1	Zm00001d043022_P001	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU87773	Sorghum	cytosol	84.74	84.24
TraesCS3D01G341500.1	Wheat	cytosol	61.45	61.45
TraesCS3A01G347900.1	Wheat	cytosol	61.25	61.25
TraesCS3B01G379800.1	Wheat	cytosol	60.86	60.86
Os01t0827200-01	Rice	cytosol, extracellular	59.49	60.32
Zm00001d010604_P008	Maize	cytosol, plastid	57.93	58.04
CDY58875	Canola	cytosol	41.68	41.44
CDX81034	Canola	cytosol	40.12	41.25
Solyc09g031590.2.1	Tomato	cytosol	2.74	41.18
Bra005925.1-P	Field mustard	cytosol	41.29	41.05
GSMUA_Achr11P...	Banana	nucleus	41.68	40.49
KRH73242	Soybean	cytosol	41.49	40.46
KRH14903	Soybean	cytosol	41.1	40.38
Solyc06g050550.2.1	Tomato	plastid	42.27	39.93
PGSC0003DMT400061516	Potato	cytosol	42.27	39.93
Zm00001d038007_P001	Maize	extracellular	42.27	39.06
Bra009291.1-P	Field mustard	cytosol	40.31	38.36
CDX70009	Canola	cytosol	40.12	38.32
VIT_06s0004g07430.t01	Wine grape	cytosol	41.68	38.31
CDX99005	Canola	cytosol	40.31	38.22
KRH17110	Soybean	cytosol	41.1	37.43
VIT_13s0067g01990.t01	Wine grape	cytosol	40.9	37.32
Zm00001d038449_P001	Maize	cytosol	54.99	37.27
CDY32985	Canola	cytosol	37.38	36.94
KRH72755	Soybean	cytosol, endoplasmic reticulum	40.12	36.74
Bra002651.1-P	Field mustard	cytosol	39.53	36.33
AT5G07120.1	Thale cress	cytosol	40.31	36.01
CDY57386	Canola	cytosol	39.33	35.96
Solyc09g031600.2.1	Tomato	cytosol	32.49	35.1
AT5G58440.1	Thale cress	cytosol	39.73	34.58
Zm00001d012286_P001	Maize	cytosol	17.22	21.1
Zm00001d042761_P001	Maize	mitochondrion	18.2	19.87

Protein Annotations

Gene3D:1.20.1270.60	EntrezGene:100191880	MapMan:22.5.5.3.6	Gene3D:3.30.1520.10	InterPro:AH/BAR_dom_sf	UniProt:B4FAI4
EMBL:BT034122	ncoils:Coil	EMBL:EU967115	GO:GO:0003674	GO:GO:0005488	GO:GO:0008289
GO:GO:0035091	InterPro:IPR001683	InterPro:IPR027267	InterPro:IPR036871	ProteinID:ONM36741.1	PFAM:PF00787
PFAM:PF09325	PFscan:PS50195	PANTHER:PTHR10555	PANTHER:PTHR10555:SF146	InterPro:PX_dom_sf	InterPro:Phox
SMART:SM00312	SUPFAM:SSF103657	SUPFAM:SSF64268	UniParc:UPI00017B60BE	InterPro:Vps5_C	EnsemblPlantsGene:Zm00001d043022
EnsemblPlants:Zm00001d043022_P001	EnsemblPlants:Zm00001d043022_T001	SEG:seg	:	:	:

Description

Sorting nexin 2B

Coordinates

chr3:+:186795510..186813623

Molecular Weight (calculated)

56554.0 Da

IEP (calculated)

6.765

GRAVY (calculated)

-0.391

Length

511 amino acids

Sequence
(BLAST)

001: MMATEPLSPG NLVEDVETLP LDSSSTLAAT TDPLLRPPPP SSTFSPTAGE NHGAFLDEED EDVVDDFTPP LAPHAATAAT KSREASPWFA EITVSEPRKH
101: AEPATGAVGV IPGSASYVSY LIATQVPDGG EFRVRRRFRD VVALADRLAE THRGLFVPAR PDKSIVEGQV MQRHDFVNQR CVTLQRYLRR LAAHPVVGRN
201: PILHAFLTEP SGIPTSDGES PRWSPAMSAA TSMAASAPVT PTKSGRDFFG VFKGLKQTVT NGWVAVRPPL VEEEIDTKYL VHKAKLEDLE KHLVTASQQA
301: EAFVKAFDDL RSTTGLLGMS FIKLAMFEKE QAACSSQKRR AADISNFASA VIRVSRSQTK LNTEIVKHLG IIHEYMETMA SVHNAFTDRS NALLRVQNLS
401: ADLYFLHTRA GKLESVSARG MDQERSRYQK IEELKETVRA TEDAKTRALK ELELIKENNM NEIKRFNKER RQDLVEMLKG FVLDQATYSD HFATIWTKVA
501: EETKGYANSS S

Best Arabidopsis Sequence Match ( AT5G07120.1 )
(BLAST)

001: MMGSENDEES HLHSSKEEME KLFLREDGDP LTKSNVNGDK SNSNYRSAMS TLFDSRHPSI VVTPADSDPL FAPPSYYSES RSPRSKPNGG DRVSSYLEPP
101: SYADVIFSPF DDISEINGSE DGHSQSSDSL SRSPSSLSSD YIKITVSNPQ KEQEATNSMI PGGSTYITYQ ITTRTNLSDY GGSEFSVRRR FRDIVTLADR
201: LAESYRGFCI PPRPDKSIVE SQVMQKQEFV EQRRVALEKY LRRLVAHPVI RNSDELKVFL QAQGKLPLAT STDVASRMLD GAVKLPKQLF GEGGGASSVE
301: VVQPGRGGRD FLRMFKELRQ SVSNDWGGSK PPVVEEDKEF LEKKEKMYDL EQQIINASQQ AESLVKAQQD MGETMGELGL AFIKLTKFEN EEAVFNSQRA
401: RANDMKNLAT SAVKASRFYR ELNSQTVKHL DTLHDYLGLM MAVQGAFADR SSALLTVQTL LSELSSLEAR AEKLEVASSK VFGGDKSRIK KIEELKETIK
501: VTEDSKNVAI REYEQIKENN WSEVERLDRE RRADFLNMMK GFVANQVGYA EKIANVWTKV AEETRQYDRE SS

Arabidopsis Description

SNX2BSorting nexin 2B [Source:UniProtKB/Swiss-Prot;Acc:B9DFS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.