Factsheet for Zm00001d012286_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010604_P008
Zm00001d012286_P001
Zm00001d015657_P001
Zm00001d036838_P001
Zm00001d038007_P001
Zm00001d038449_P001
Zm00001d042761_P001
Zm00001d043022_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06140.1	Zm00001d036838_P001	AT2G30330.1	20971704
AT5G06140.1	Zm00001d012286_P001	AT5G06140.1	21156856
AT5G06140.1	Zm00001d042761_P001	AT5G06140.1	21156856
AT5G06140.1	Zm00001d010604_P008	AT5G07120.1	21156856
AT5G06140.1	Zm00001d038007_P001	AT5G07120.1	21156856
AT5G06140.1	Zm00001d038449_P001	AT5G07120.1	21156856
AT5G06140.1	Zm00001d043022_P001	AT5G07120.1	21156856
AT5G06140.1	Zm00001d015657_P001	AT5G49550.1	20971704
AT5G06140.1	Zm00001d010604_P008	AT5G58440.1	21156856
AT5G06140.1	Zm00001d038007_P001	AT5G58440.1	21156856
AT5G06140.1	Zm00001d038449_P001	AT5G58440.1	21156856
AT5G06140.1	Zm00001d043022_P001	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03929	Sorghum	plastid	89.93	93.75
TraesCS3D01G367700.1	Wheat	cytosol, plastid	84.17	87.75
TraesCS3B01G407400.2	Wheat	cytosol, plastid	83.93	87.5
Os01t0862300-01	Rice	plasma membrane	82.01	85.71
HORVU3Hr1G083780.10	Barley	cytosol	84.17	85.19
TraesCS3A01G375200.3	Wheat	cytosol, plastid	84.41	83.22
Zm00001d042761_P001	Maize	mitochondrion	84.41	75.21
PGSC0003DMT400022861	Potato	cytosol	64.03	72.75
VIT_08s0007g02960.t01	Wine grape	plastid	69.3	72.07
GSMUA_Achr10P...	Banana	cytosol, plastid	69.78	71.85
Solyc09g010130.2.1	Tomato	plastid	50.36	71.19
Bra009166.1-P	Field mustard	cytosol	66.43	71.03
CDY60440	Canola	cytosol	66.43	71.03
CDX98906	Canola	cytosol	66.43	71.03
KRH32778	Soybean	plastid	68.59	70.1
AT5G06140.1	Thale cress	cytosol	65.23	67.66
KRH72265	Soybean	plastid	68.82	62.94
VIT_16s0039g01230.t01	Wine grape	cytosol, plastid	20.62	53.09
CDY00386	Canola	nucleus	34.77	24.13
Zm00001d038007_P001	Maize	extracellular	24.7	18.63
Zm00001d043022_P001	Maize	cytosol	21.1	17.22
Zm00001d010604_P008	Maize	cytosol, plastid	20.38	16.67
Zm00001d038449_P001	Maize	cytosol	20.62	11.41

Protein Annotations

Gene3D:1.20.1270.60	EntrezGene:100194251	MapMan:22.5.5.3.5	Gene3D:3.30.1520.10	UniProt:A0A1D6G7Z3	InterPro:AH/BAR_dom_sf
ProteinID:AQK99275.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0008289	GO:GO:0035091	InterPro:IPR001683
InterPro:IPR027267	InterPro:IPR036871	PFAM:PF00787	PFAM:PF09325	PFscan:PS50195	PANTHER:PTHR10555
PANTHER:PTHR10555:SF170	InterPro:PX_dom_sf	InterPro:Phox	SMART:SM00312	SUPFAM:SSF103657	SUPFAM:SSF64268
UniParc:UPI0008438A0B	InterPro:Vps5_C	EnsemblPlantsGene:Zm00001d012286	EnsemblPlants:Zm00001d012286_P001	EnsemblPlants:Zm00001d012286_T001	SEG:seg

Description

Sorting nexin 1

Coordinates

chr8:+:171908319..171912516

Molecular Weight (calculated)

48163.7 Da

IEP (calculated)

6.734

GRAVY (calculated)

-0.520

Length

417 amino acids

Sequence
(BLAST)

001: MISPERSSSQ SPRSQAVAGA PFLWISVMDP VKMGTGVQAY ISYRVITKTN LPEFEGPEKI VIRRYSDFEW LHDRLAERYK GVFIPPLPEK NAVEKFRFSK
101: EFIELRRQAL DLFVNRIASH PELKQSDVLR TFLQADEEIM DRARSYETGI FKKPSDFLQM FKDVQSKVSD VVLGKEKPVE ESTPEYEKLK SYIFELEIHL
201: AEAQKQAYRL VKRHRELGQS LADFGKAIKL LGSCEGDLME KVFSEVGSKS EMLSIKLQRE ADNLLFNFEE PLKDYVRALQ SIKATMLDRA NAFRQHFDLD
301: QERKYKELNL EKLKFMNPEK YAEAESEFRG ASCCNFPLRN SLHSLVDELK ADSEEATKKF EHIVRLMNEE LSRFQEQKTA DIGLAFHEFA KGQAKLAKDI
401: ADAWRSVLPK LEACSTS

Best Arabidopsis Sequence Match ( AT5G06140.1 )
(BLAST)

001: MESTEQPRNI SGSMQSPRSP SSHPYLSVSV TDPVKLGNGV QAYISYRVIT KTNLPEYQGP EKIVIRRYSD FVWLRDRLFE KYKGIFIPPL PEKSAVEKFR
101: FSAEFIEMRR AALDIFVNRI ALHPELQQSE DLRTFLQADE ETMDRFRFQE TSIFKKPADL MQMFRDVQSK VSDAVLGKEK PVEETTADYE KLKHYIFELE
201: NHLTEAQKHA YRLVKRHREL GQSLLDFGKA VKLLGACEGE PTGKAFSDLG TKSELLSIKL QKEAQQVLMN FEEPLKDYVR YVQSIKATIA ERGTAFKQHC
301: ELSETTKLKE INLDKLMLTR SDKVGEAEIE YREIKAESEE ATRRFERIVK RMEDEIVRFQ EQKTEEMGVA FHQFAKGQAR LANSVADAWR SLLPKLEASY
401: SV

Arabidopsis Description

SNX1Sorting nexin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG38]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.