Factsheet for Os01t0862300-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0827200-01
Os01t0862300-01
Os02t0190900-01
Os05t0346100-01
Os11t0112300-01
Os12t0111900-00
Os12t0416500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06140.1	Os11t0112300-01	AT2G30330.1	20971704
AT5G06140.1	Os12t0111900-00	AT2G30330.1	20971704
AT5G06140.1	Os12t0416500-01	AT2G30330.1	20971704
AT5G06140.1	Os01t0862300-01	AT5G06140.1	21156856
AT5G06140.1	Os01t0827200-01	AT5G07120.1	21156856
AT5G06140.1	Os05t0346100-01	AT5G07120.1	21156856
AT5G06140.1	Os02t0190900-01	AT5G49550.1	20971704
AT5G06140.1	Os01t0827200-01	AT5G58440.1	21156856
AT5G06140.1	Os05t0346100-01	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03929	Sorghum	plastid	89.22	89.0
TraesCS3D01G367700.1	Wheat	cytosol, plastid	88.97	88.75
TraesCS3B01G407400.2	Wheat	cytosol, plastid	88.72	88.5
HORVU3Hr1G083780.10	Barley	cytosol	89.47	86.65
TraesCS3A01G375200.3	Wheat	cytosol, plastid	88.97	83.92
Zm00001d012286_P001	Maize	cytosol	85.71	82.01
VIT_08s0007g02960.t01	Wine grape	plastid	72.68	72.32
GSMUA_Achr10P...	Banana	cytosol, plastid	72.18	71.11
Zm00001d042761_P001	Maize	mitochondrion	83.21	70.94
Bra009166.1-P	Field mustard	cytosol	69.17	70.77
CDY60440	Canola	cytosol	69.17	70.77
CDX98906	Canola	cytosol	69.17	70.77
PGSC0003DMT400022861	Potato	cytosol	64.66	70.3
KRH32778	Soybean	plastid	71.43	69.85
AT5G06140.1	Thale cress	cytosol	68.92	68.41
Solyc09g010130.2.1	Tomato	plastid	50.13	67.8
KRH72265	Soybean	plastid	71.43	62.5
VIT_16s0039g01230.t01	Wine grape	cytosol, plastid	22.56	55.56
CDY00386	Canola	nucleus	37.09	24.63
Os05t0346100-01	Rice	plasma membrane	25.06	18.52
Os01t0827200-01	Rice	cytosol, extracellular	21.8	17.26

Protein Annotations

Gene3D:1.20.1270.60	MapMan:22.5.5.3.5	Gene3D:3.30.1520.10	EntrezGene:4324745	InterPro:AH/BAR_dom_sf	EMBL:AK102304
EMBL:AK120353	ProteinID:BAD82041.1	ProteinID:BAD82588.1	ProteinID:BAF06795.1	ProteinID:BAS75348.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005768	GO:GO:0005771	GO:GO:0005829	GO:GO:0006623	GO:GO:0006810	GO:GO:0006896
GO:GO:0006897	GO:GO:0007275	GO:GO:0008150	GO:GO:0008289	GO:GO:0009605	GO:GO:0009606
GO:GO:0009628	GO:GO:0009958	GO:GO:0009987	GO:GO:0010252	GO:GO:0016020	GO:GO:0016043
GO:GO:0016050	GO:GO:0019898	GO:GO:0030904	GO:GO:0035091	GO:GO:0043231	GO:GO:0048364
InterPro:IPR001683	InterPro:IPR027267	InterPro:IPR036871	EnsemblPlantsGene:Os01g0862300	EnsemblPlants:Os01t0862300-01	PFAM:PF00787
PFAM:PF09325	PFscan:PS50195	PANTHER:PTHR10555	PANTHER:PTHR10555:SF170	InterPro:PX_dom_sf	InterPro:Phox
UniProt:Q5N7G9	SMART:SM00312	SUPFAM:SSF103657	SUPFAM:SSF64268	UniParc:UPI000049E952	InterPro:Vps5_C
RefSeq:XP_015620548.1	SEG:seg	:	:	:	:

Description

Similar to Sorting nexin 1. (Os01t0862300-01);Similar to Sorting nexin 1. (Os01t0862300-02)

Coordinates

chr1:-:37316220..37320517

Molecular Weight (calculated)

45777.5 Da

IEP (calculated)

6.538

GRAVY (calculated)

-0.561

Length

399 amino acids

Sequence
(BLAST)

001: MSQERSQSQS PRSPASAAGV PFLSISVTDP VKMGTGVQAY ISYRVITKTN LPDFEGQEKI VIRRYSDFEW LHDRLAEKYK GIFIPPLPEK NAVEKFRFSK
101: EFIELRRQAL DLFVNRIASH PELKQSGDLK IFLQADEEKM DRERSYETGI FKKPSDFLQM FKDVQSKVSD VVLGKEKPVE ESSPEYEKLK NYIFELENHL
201: AEAQKQAFRL VKRHRELGQS LADFGKAIKL LGACEGDSLE KVFSEVGSKS EMLSVKLQRE ADNLLFNFEE PLKDYVRAVQ SIKATMVDRA NAFRQHHDLF
301: QQKEYKGVNL EKLKFVNPDK FSELEAEVRE LTADSEEATK RFEHIVAVMN EELARFQEQK TADIGFAFHE FAKGQAKLAK DIADAWRGVL PKLEACSTS

Best Arabidopsis Sequence Match ( AT5G06140.1 )
(BLAST)

001: MESTEQPRNI SGSMQSPRSP SSHPYLSVSV TDPVKLGNGV QAYISYRVIT KTNLPEYQGP EKIVIRRYSD FVWLRDRLFE KYKGIFIPPL PEKSAVEKFR
101: FSAEFIEMRR AALDIFVNRI ALHPELQQSE DLRTFLQADE ETMDRFRFQE TSIFKKPADL MQMFRDVQSK VSDAVLGKEK PVEETTADYE KLKHYIFELE
201: NHLTEAQKHA YRLVKRHREL GQSLLDFGKA VKLLGACEGE PTGKAFSDLG TKSELLSIKL QKEAQQVLMN FEEPLKDYVR YVQSIKATIA ERGTAFKQHC
301: ELSETTKLKE INLDKLMLTR SDKVGEAEIE YREIKAESEE ATRRFERIVK RMEDEIVRFQ EQKTEEMGVA FHQFAKGQAR LANSVADAWR SLLPKLEASY
401: SV

Arabidopsis Description

SNX1Sorting nexin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG38]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.