CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93734
KRH17110
KRH18324
KRH32778
KRH72265
KRH72755
KRH72791

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06140.1	KRH72791	AT2G30330.1	20971704
AT5G06140.1	KRH32778	AT5G06140.1	21156856
AT5G06140.1	KRH72265	AT5G06140.1	21156856
AT5G06140.1	KRH17110	AT5G07120.1	21156856
AT5G06140.1	KRH72755	AT5G07120.1	21156856
AT5G06140.1	KRG93734	AT5G49550.1	20971704
AT5G06140.1	KRH18324	AT5G49550.1	20971704
AT5G06140.1	KRH17110	AT5G58440.1	21156856
AT5G06140.1	KRH72755	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32778	Soybean	plastid	86.4	96.57
VIT_08s0007g02960.t01	Wine grape	plastid	77.41	88.03
PGSC0003DMT400022861	Potato	cytosol	66.67	82.83
Bra009166.1-P	Field mustard	cytosol	70.39	82.31
Solyc09g010130.2.1	Tomato	plastid	52.85	81.69
AT5G06140.1	Thale cress	cytosol	69.74	79.1
GSMUA_Achr10P...	Banana	cytosol, plastid	67.11	75.56
EES03929	Sorghum	plastid	63.6	72.5
Os01t0862300-01	Rice	plasma membrane	62.5	71.43
TraesCS3D01G367700.1	Wheat	cytosol, plastid	62.28	71.0
TraesCS3B01G407400.2	Wheat	cytosol, plastid	62.06	70.75
HORVU3Hr1G083780.10	Barley	cytosol	62.28	68.93
Zm00001d012286_P001	Maize	cytosol	62.94	68.82
TraesCS3A01G375200.3	Wheat	cytosol, plastid	62.5	67.38
Zm00001d042761_P001	Maize	mitochondrion	62.06	60.47
CDY00386	Canola	nucleus	35.31	26.79
KRH14903	Soybean	cytosol	23.46	20.58
KRH72755	Soybean	cytosol, endoplasmic reticulum	24.12	19.71
KRH73242	Soybean	cytosol	22.59	19.66
KRH17110	Soybean	cytosol	23.68	19.25

Protein Annotations

Gene3D:1.20.1270.60	EntrezGene:100777531	MapMan:22.5.5.3.5	Gene3D:3.30.1520.10	EMBL:ACUP02001197	InterPro:AH/BAR_dom_sf
ncoils:Coil	EnsemblPlantsGene:GLYMA_02G201400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0006810	GO:GO:0006897	GO:GO:0008150
GO:GO:0008289	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016050	GO:GO:0019898
GO:GO:0035091	InterPro:IPR001683	InterPro:IPR027267	InterPro:IPR036871	UniProt:K7K9Q0	EnsemblPlants:KRH72265
ProteinID:KRH72265	ProteinID:KRH72265.1	PFAM:PF00787	PFAM:PF09325	PFscan:PS50195	PANTHER:PTHR10555
PANTHER:PTHR10555:SF170	InterPro:PX_dom_sf	InterPro:Phox	SMART:SM00312	SUPFAM:SSF103657	SUPFAM:SSF64268
UniParc:UPI0002961E85	InterPro:Vps5_C	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:38539394..38547251

Molecular Weight (calculated)

52112.6 Da

IEP (calculated)

9.713

GRAVY (calculated)

-0.564

Length

456 amino acids

Sequence
(BLAST)

001: MYPPRHPPWA RSNSVAGQSN SPSGNQFHSL LFSKPRFSAV PLRHSLAPKT TMNMNPPQRT LSGSSQSPRS PSSSSQPFLS VSVTDPVKLG NGVQAYISYR
101: VITKTNFPEY QGPEKIVIRR YSDFVWLRDR LFEKYKGIFI PPLPEKSAVE KFRFSAEFIE MRRQALDVFV NRIASHHELQ QSEDLRLFLQ AEEETMERLR
201: SHETGIFKKK PADLMQIFKD VQSKVSDVVL GKEKPVEESN PEYEKMKHYI FELENHLAEA QKHAYRLVKR HRELGQSLSD FGKAVKLLGA SEGNALGKAF
301: SELGMKSEIL SAKLQKEAHQ LLMNFEEPLK DYVRAVQSIK ATIAERANAF RRQCELAETM KLKEINLDKL MLIRSDKVAE AEHEYKELKA ESEQATKTFE
401: MIVKLMNEEM GRFQEQKTLD MGIAFHEFAK GQARLANGIA DAWRSLLPKL EACSTS

Best Arabidopsis Sequence Match ( AT5G06140.1 )
(BLAST)

001: MESTEQPRNI SGSMQSPRSP SSHPYLSVSV TDPVKLGNGV QAYISYRVIT KTNLPEYQGP EKIVIRRYSD FVWLRDRLFE KYKGIFIPPL PEKSAVEKFR
101: FSAEFIEMRR AALDIFVNRI ALHPELQQSE DLRTFLQADE ETMDRFRFQE TSIFKKPADL MQMFRDVQSK VSDAVLGKEK PVEETTADYE KLKHYIFELE
201: NHLTEAQKHA YRLVKRHREL GQSLLDFGKA VKLLGACEGE PTGKAFSDLG TKSELLSIKL QKEAQQVLMN FEEPLKDYVR YVQSIKATIA ERGTAFKQHC
301: ELSETTKLKE INLDKLMLTR SDKVGEAEIE YREIKAESEE ATRRFERIVK RMEDEIVRFQ EQKTEEMGVA FHQFAKGQAR LANSVADAWR SLLPKLEASY
401: SV

Arabidopsis Description

SNX1Sorting nexin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG38]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.