Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
KRH72791 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G49550.1 | KRH72791 | AT2G30330.1 | 20971704 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH18324 | Soybean | cytosol | 94.62 | 94.62 |
Solyc02g065690.2.1 | Tomato | cytosol | 65.38 | 74.56 |
PGSC0003DMT400068296 | Potato | cytosol | 65.38 | 74.56 |
VIT_14s0083g00770.t01 | Wine grape | cytosol | 66.92 | 71.9 |
CDX85416 | Canola | cytosol | 54.62 | 64.55 |
CDX86228 | Canola | cytosol | 54.62 | 64.55 |
Bra010029.1-P | Field mustard | cytosol | 53.85 | 63.64 |
Os02t0190900-01 | Rice | cytosol, nucleus, plastid | 57.69 | 61.98 |
GSMUA_Achr8P25320_001 | Banana | cytosol | 57.69 | 60.98 |
TraesCS6A01G170800.1 | Wheat | cytosol | 58.46 | 60.32 |
TraesCS6D01G160500.1 | Wheat | cytosol | 58.46 | 60.32 |
EES06426 | Sorghum | cytosol | 56.15 | 57.48 |
CDY57026 | Canola | cytosol | 56.15 | 57.48 |
Bra036135.1-P | Field mustard | cytosol | 56.15 | 57.48 |
GSMUA_Achr4P09530_001 | Banana | cytosol | 32.31 | 56.76 |
AT5G49550.1 | Thale cress | cytosol | 55.38 | 56.69 |
Zm00001d015657_P001 | Maize | cytosol | 55.38 | 54.96 |
CDY64756 | Canola | cytosol | 55.38 | 34.12 |
Protein Annotations
EMBL:ACUP02011617 | EnsemblPlants:KRG93734 | EnsemblPlantsGene:GLYMA_19G037000 | EntrezGene:100782608 | GO:GO:0003674 | GO:GO:0003824 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 |
GO:GO:0055114 | InterPro:BLOC1_su2 | ncoils:Coil | PFAM:PF10046 | ProteinID:KRG93734 | ProteinID:KRG93734.1 |
ProteinID:KRG93735.1 | UniParc:UPI000233E610 | UniProt:I1N6H2 | MapMan:22.5.3.2 | : | : |
Description
hypothetical protein
Coordinates
chr19:+:5136617..5139297
Molecular Weight (calculated)
14906.7 Da
IEP (calculated)
4.497
GRAVY (calculated)
-0.482
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNMKKDETQ DRKQDELAES LDGLFSSVST MIKSELQGTN NHLELLEKMN VRVAEEYKGF GDLASGLRVF VEQLKCKSGS FNEYVEQIDN IEKQVTEFEA
101: VVSMLDKYVV LLESRVQSVY QNKIHLPIPQ
101: VVSMLDKYVV LLESRVQSVY QNKIHLPIPQ
001: MADSRDDLAE SLQNLFTSVS SMVKSELQGT NNHLDLLEKM NLRVASEYDD MGDVAAGLRV FAEQMKSKSG GLDEFVGQMD AIEKQVSEFE AVISVLDRYV
101: SVLESKIRAE YRHPHHQRRS NDSVVTD
101: SVLESKIRAE YRHPHHQRRS NDSVVTD
Arabidopsis Description
BLOS2Biogenesis of lysosome-related organelles complex 1 subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:F4K657]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.