Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400067769 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G49550.1 | PGSC0003DMT400067769 | AT2G30330.1 | 20971704 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g065690.2.1 | Tomato | cytosol | 97.37 | 97.37 |
| VIT_14s0083g00770.t01 | Wine grape | cytosol | 81.58 | 76.86 |
| KRG93734 | Soybean | cytosol | 74.56 | 65.38 |
| KRH18324 | Soybean | cytosol | 73.68 | 64.62 |
| Os02t0190900-01 | Rice | cytosol, nucleus, plastid | 68.42 | 64.46 |
| GSMUA_Achr8P25320_001 | Banana | cytosol | 65.79 | 60.98 |
| CDX85416 | Canola | cytosol | 57.89 | 60.0 |
| TraesCS6D01G160500.1 | Wheat | cytosol | 65.79 | 59.52 |
| CDX86228 | Canola | cytosol | 57.02 | 59.09 |
| TraesCS6A01G170800.1 | Wheat | cytosol | 64.91 | 58.73 |
| Bra010029.1-P | Field mustard | cytosol | 56.14 | 58.18 |
| EES06426 | Sorghum | cytosol | 63.16 | 56.69 |
| CDY57026 | Canola | cytosol | 59.65 | 53.54 |
| Bra036135.1-P | Field mustard | cytosol | 59.65 | 53.54 |
| Zm00001d015657_P001 | Maize | cytosol | 61.4 | 53.44 |
| AT5G49550.1 | Thale cress | cytosol | 58.77 | 52.76 |
| GSMUA_Achr4P09530_001 | Banana | cytosol | 34.21 | 52.7 |
| CDY64756 | Canola | cytosol | 59.65 | 32.23 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400068296 | EnsemblPlantsGene:PGSC0003DMG400026550 | EntrezGene:102597835 | InterPro:BLOC1_su2 | PFAM:PF10046 | PGSC:PGSC0003DMG400026550 |
| RefSeq:XP_006365651.1 | UniParc:UPI0002967740 | UniProt:M1CIS9 | MapMan:22.5.3.2 | : | : |
Description
Phytoene dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400026550]
Coordinates
chr2:+:24915574..24918901
Molecular Weight (calculated)
12879.2 Da
IEP (calculated)
3.978
GRAVY (calculated)
-0.260
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQDHLAESL NDLLTNVSTM IRGELQETNN VLELVEKMNT RVAEEYKGFG DVASGLTIFV EQLKCKSGSF DEYVQQIDTI EQQVTEFEAV ISMLDKYVSL
101: LESKVQSAYQ IPPP
101: LESKVQSAYQ IPPP
001: MADSRDDLAE SLQNLFTSVS SMVKSELQGT NNHLDLLEKM NLRVASEYDD MGDVAAGLRV FAEQMKSKSG GLDEFVGQMD AIEKQVSEFE AVISVLDRYV
101: SVLESKIRAE YRHPHHQRRS NDSVVTD
101: SVLESKIRAE YRHPHHQRRS NDSVVTD
Arabidopsis Description
BLOS2Biogenesis of lysosome-related organelles complex 1 subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:F4K657]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.