Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400022861 | |
| PGSC0003DMT400068296 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G30330.1 | PGSC0003DMT400022861 | AT5G06140.1 | 20971704 |
| AT2G30330.1 | PGSC0003DMT400068296 | AT5G49550.1 | 20971704 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g068450.1.1 | Tomato | cytosol | 95.45 | 95.45 |
| VIT_06s0004g07760.t01 | Wine grape | cytosol, mitochondrion | 67.42 | 59.73 |
| KRH72791 | Soybean | cytosol | 61.36 | 59.56 |
| Os11t0112300-01 | Rice | cytosol | 54.55 | 56.25 |
| EES07883 | Sorghum | cytosol | 54.55 | 52.55 |
| Os12t0416500-01 | Rice | cytosol | 38.64 | 50.0 |
| Bra022792.1-P | Field mustard | cytosol | 56.82 | 49.67 |
| AT2G30330.1 | Thale cress | cytosol | 56.06 | 48.68 |
| GSMUA_Achr10P... | Banana | cytosol | 59.85 | 39.5 |
| TraesCS5B01G147400.1 | Wheat | cytosol | 37.88 | 39.06 |
| TraesCS5D01G144100.1 | Wheat | peroxisome | 37.88 | 39.06 |
| Os12t0111900-00 | Rice | cytosol | 37.12 | 36.84 |
| HORVU5Hr1G046970.2 | Barley | cytosol | 38.64 | 35.92 |
| Zm00001d036838_P001 | Maize | cytosol, plastid | 22.73 | 34.48 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400067769 | EnsemblPlantsGene:PGSC0003DMG400026358 | EntrezGene:102604585 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005829 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0031083 |
| GO:GO:0048364 | InterPro:BLOC1S1 | PANTHER:PTHR13073 | PFAM:PF06320 | PGSC:PGSC0003DMG400026358 | RefSeq:XP_006362892.1 |
| UniParc:UPI000294DECF | UniProt:M1CHV1 | MapMan:22.5.3.1 | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400026358]
Coordinates
chr11:+:40402248..40404838
Molecular Weight (calculated)
15016.9 Da
IEP (calculated)
6.947
GRAVY (calculated)
-0.478
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRSKQVDPN GLEASLIQII NSHHSSSLKL RESTEKAKKD GIRSARRVSE LLVDSVNREV QEAFVMQKRI EMEIRALTAS ILQFGKQTDQ WLAASHSINT
101: AIKEIGDFEN WMKTMEFDCK SINAAICNIH QE
101: AIKEIGDFEN WMKTMEFDCK SINAAICNIH QE
001: MNTPMSLSAA RGRMLPFLEK EKSEEESETL ESSLLQLIDD NRRSSLQLRE KTERSRKEAI RHAARTADLL VKAVNGGVEE CFVNEKRIES EIRNLAITVA
101: KFGKQTDQWL AVTHAVNSAV KEIGDFENWM KTMEFDCKKI TAAIRNIHED QQ
101: KFGKQTDQWL AVTHAVNSAV KEIGDFENWM KTMEFDCKKI TAAIRNIHED QQ
Arabidopsis Description
BLOS1Biogenesis of lysosome-related organelles complex 1 subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:O22929]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.