Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G144100.1 | Wheat | peroxisome | 82.03 | 82.03 |
| Os12t0416500-01 | Rice | cytosol | 57.81 | 72.55 |
| HORVU5Hr1G046970.2 | Barley | cytosol | 79.69 | 71.83 |
| EES07883 | Sorghum | cytosol | 64.06 | 59.85 |
| Os11t0112300-01 | Rice | cytosol | 58.59 | 58.59 |
| Os12t0111900-00 | Rice | cytosol | 56.25 | 54.14 |
| KRH72791 | Soybean | cytosol | 42.97 | 40.44 |
| Solyc11g068450.1.1 | Tomato | cytosol | 39.84 | 38.64 |
| PGSC0003DMT400067769 | Potato | cytosol | 39.06 | 37.88 |
| Bra022792.1-P | Field mustard | cytosol | 44.53 | 37.75 |
| VIT_06s0004g07760.t01 | Wine grape | cytosol, mitochondrion | 43.75 | 37.58 |
| AT2G30330.1 | Thale cress | cytosol | 42.97 | 36.18 |
| GSMUA_Achr10P... | Banana | cytosol | 45.31 | 29.0 |
| Zm00001d036838_P001 | Maize | cytosol, plastid | 10.94 | 16.09 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G147400.1 | EnsemblPlantsGene:TraesCS5B01G147400 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005768 | GO:GO:0005829 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0031083 | GO:GO:0048364 |
| InterPro:BLOC1S1 | PANTHER:PTHR13073 | PFAM:PF06320 | SEG:seg | TMHMM:TMhelix | MapMan:22.5.3.1 |
Description
No Description!
Coordinates
chr5B:+:275368628..275369164
Molecular Weight (calculated)
14261.5 Da
IEP (calculated)
10.692
GRAVY (calculated)
-0.066
Length
128 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGAKAAAGP AAGGQLESAL LHIMQQHHHQ SLRQRQQTER AKKDALRSAA RLAGHLVEAV DGGVQELFVN EKRIELEARA LLGTIARYRK QSDQWLAATN
101: AVNSILKVFT LLLRIIVVTK WMCLIHMF
101: AVNSILKVFT LLLRIIVVTK WMCLIHMF
001: MNTPMSLSAA RGRMLPFLEK EKSEEESETL ESSLLQLIDD NRRSSLQLRE KTERSRKEAI RHAARTADLL VKAVNGGVEE CFVNEKRIES EIRNLAITVA
101: KFGKQTDQWL AVTHAVNSAV KVSDHLYFLR VFKITFRLLC FVQ
101: KFGKQTDQWL AVTHAVNSAV KVSDHLYFLR VFKITFRLLC FVQ
Arabidopsis Description
BLOS1Biogenesis of lysosome-related organelles complex 1 subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:O22929]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.