Factsheet for TraesCS3B01G407400.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

mitochondrion 1
cytosol 2
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G221800.1
TraesCS1A01G298000.1
TraesCS1B01G235000.1
TraesCS1B01G307500.1
TraesCS1D01G223500.1
TraesCS1D01G293200.1
TraesCS3A01G347900.1
TraesCS3A01G375200.3
TraesCS3B01G379800.1
TraesCS3B01G407400.2
TraesCS3D01G341500.1
TraesCS3D01G367700.1
TraesCS5B01G147400.1
TraesCS5D01G144100.1
TraesCS6A01G170800.1
TraesCS6D01G160500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06140.1	TraesCS5B01G147400.1	AT2G30330.1	20971704
AT5G06140.1	TraesCS5D01G144100.1	AT2G30330.1	20971704
AT5G06140.1	TraesCS3A01G375200.3	AT5G06140.1	21156856
AT5G06140.1	TraesCS3B01G407400.2	AT5G06140.1	21156856
AT5G06140.1	TraesCS3D01G367700.1	AT5G06140.1	21156856
AT5G06140.1	TraesCS1A01G221800.1	AT5G07120.1	21156856
AT5G06140.1	TraesCS1A01G298000.1	AT5G07120.1	21156856
AT5G06140.1	TraesCS1B01G235000.1	AT5G07120.1	21156856
AT5G06140.1	TraesCS1B01G307500.1	AT5G07120.1	21156856
AT5G06140.1	TraesCS1D01G223500.1	AT5G07120.1	21156856
AT5G06140.1	TraesCS1D01G293200.1	AT5G07120.1	21156856
AT5G06140.1	TraesCS3A01G347900.1	AT5G07120.1	21156856
AT5G06140.1	TraesCS3B01G379800.1	AT5G07120.1	21156856
AT5G06140.1	TraesCS3D01G341500.1	AT5G07120.1	21156856
AT5G06140.1	TraesCS6A01G170800.1	AT5G49550.1	20971704
AT5G06140.1	TraesCS6D01G160500.1	AT5G49550.1	20971704
AT5G06140.1	TraesCS1A01G221800.1	AT5G58440.1	21156856
AT5G06140.1	TraesCS1A01G298000.1	AT5G58440.1	21156856
AT5G06140.1	TraesCS1B01G235000.1	AT5G58440.1	21156856
AT5G06140.1	TraesCS1B01G307500.1	AT5G58440.1	21156856
AT5G06140.1	TraesCS1D01G223500.1	AT5G58440.1	21156856
AT5G06140.1	TraesCS1D01G293200.1	AT5G58440.1	21156856
AT5G06140.1	TraesCS3A01G347900.1	AT5G58440.1	21156856
AT5G06140.1	TraesCS3B01G379800.1	AT5G58440.1	21156856
AT5G06140.1	TraesCS3D01G341500.1	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G367700.1	Wheat	cytosol, plastid	99.25	99.25
HORVU3Hr1G083780.10	Barley	cytosol	99.0	96.12
TraesCS3A01G375200.3	Wheat	cytosol, plastid	98.75	93.38
EES03929	Sorghum	plastid	90.75	90.75
Os01t0862300-01	Rice	plasma membrane	88.5	88.72
Zm00001d012286_P001	Maize	cytosol	87.5	83.93
GSMUA_Achr10P...	Banana	cytosol, plastid	74.5	73.58
Zm00001d042761_P001	Maize	mitochondrion	85.75	73.29
VIT_08s0007g02960.t01	Wine grape	plastid	73.25	73.07
PGSC0003DMT400022861	Potato	cytosol	65.75	71.66
CDY60440	Canola	cytosol	69.0	70.77
CDX98906	Canola	cytosol	69.0	70.77
Bra009166.1-P	Field mustard	cytosol	69.0	70.77
Solyc09g010130.2.1	Tomato	plastid	51.25	69.49
KRH32778	Soybean	plastid	70.75	69.36
AT5G06140.1	Thale cress	cytosol	69.25	68.91
KRH72265	Soybean	plastid	70.75	62.06
VIT_16s0039g01230.t01	Wine grape	cytosol, plastid	22.75	56.17
CDY00386	Canola	nucleus	37.5	24.96
TraesCS1B01G235000.1	Wheat	cytosol, plastid	24.5	18.49
TraesCS3B01G379800.1	Wheat	cytosol	23.25	18.2
TraesCS1B01G307500.1	Wheat	cytosol	23.25	17.99

Protein Annotations

Gene3D:1.20.1270.60	MapMan:22.5.5.3.5	Gene3D:3.30.1520.10	InterPro:AH/BAR_dom_sf	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768
GO:GO:0005771	GO:GO:0005829	GO:GO:0006623	GO:GO:0006810	GO:GO:0006896	GO:GO:0007275
GO:GO:0008150	GO:GO:0008289	GO:GO:0009605	GO:GO:0009606	GO:GO:0009628	GO:GO:0009958
GO:GO:0010252	GO:GO:0016020	GO:GO:0030904	GO:GO:0035091	GO:GO:0043231	GO:GO:0048364
InterPro:IPR001683	InterPro:IPR027267	InterPro:IPR036871	PFAM:PF00787	PFAM:PF09325	PFscan:PS50195
PANTHER:PTHR10555	PANTHER:PTHR10555:SF170	InterPro:PX_dom_sf	InterPro:Phox	SMART:SM00312	SUPFAM:SSF103657
SUPFAM:SSF64268	EnsemblPlantsGene:TraesCS3B01G407400	EnsemblPlants:TraesCS3B01G407400.2	InterPro:Vps5_C	TIGR:cd06859	TIGR:cd07596
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:642820212..642824836

Molecular Weight (calculated)

45950.7 Da

IEP (calculated)

6.159

GRAVY (calculated)

-0.565

Length

400 amino acids

Sequence
(BLAST)

001: MISAERSQSQ SPRSPGAAAG APFLSICVTD PVKMGTGVQS YISYRVITKT NLPEFEGAEK IVIRRYSDFE WLHDRLAEKY KGIFIPPLPE KNAVEKFRFS
101: KEFIELRRQA LDLFINRLAS HPELKQSEDL RTFLQADEEK MDRARSFETG IFKKPGDFIQ MFKDVQSKVS DVVLGKEKPV EESTPEYEKL KHYIFELENH
201: LAEAQKQAFR LVKRHRELGQ SLADFGKAIK LLGACEGDSL EKVFSEVGSK SEMLSIKLQR EADNLLFNFE EPLKDYVRAV QSIKATMLDR ANAFRQHFDL
301: DQERKYKELN LEKMKFMNPE KFSESETEFS ELKAASEEAT ERYEHIVSVM NDELARFQEQ KTADIGLAFH EFAKGQAKLA KDIADAWRSV LPKLEACSSS

Best Arabidopsis Sequence Match ( AT5G06140.1 )
(BLAST)

001: MESTEQPRNI SGSMQSPRSP SSHPYLSVSV TDPVKLGNGV QAYISYRVIT KTNLPEYQGP EKIVIRRYSD FVWLRDRLFE KYKGIFIPPL PEKSAVEKFR
101: FSAEFIEMRR AALDIFVNRI ALHPELQQSE DLRTFLQADE ETMDRFRFQE TSIFKKPADL MQMFRDVQSK VSDAVLGKEK PVEETTADYE KLKHYIFELE
201: NHLTEAQKHA YRLVKRHREL GQSLLDFGKA VKLLGACEGE PTGKAFSDLG TKSELLSIKL QKEAQQVLMN FEEPLKDYVR YVQSIKATIA ERGTAFKQHC
301: ELSETTKLKE INLDKLMLTR SDKVGEAEIE YREIKAESEE ATRRFERIVK RMEDEIVRFQ EQKTEEMGVA FHQFAKGQAR LANSVADAWR SLLPKLEASY
401: SV

Arabidopsis Description

SNX1Sorting nexin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG38]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.