CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93734
KRH17110
KRH18324
KRH32778
KRH72265
KRH72755
KRH72791

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06140.1	KRH72791	AT2G30330.1	20971704
AT5G06140.1	KRH32778	AT5G06140.1	21156856
AT5G06140.1	KRH72265	AT5G06140.1	21156856
AT5G06140.1	KRH17110	AT5G07120.1	21156856
AT5G06140.1	KRH72755	AT5G07120.1	21156856
AT5G06140.1	KRG93734	AT5G49550.1	20971704
AT5G06140.1	KRH18324	AT5G49550.1	20971704
AT5G06140.1	KRH17110	AT5G58440.1	21156856
AT5G06140.1	KRH72755	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g02960.t01	Wine grape	plastid	86.03	87.53
KRH72265	Soybean	plastid	96.57	86.4
PGSC0003DMT400022861	Potato	cytosol	74.75	83.11
Bra009166.1-P	Field mustard	cytosol	78.43	82.05
Solyc09g010130.2.1	Tomato	plastid	59.31	82.03
AT5G06140.1	Thale cress	cytosol	77.45	78.61
GSMUA_Achr10P...	Banana	cytosol, plastid	75.49	76.05
EES03929	Sorghum	plastid	71.08	72.5
Os01t0862300-01	Rice	plasma membrane	69.85	71.43
TraesCS3D01G367700.1	Wheat	cytosol, plastid	69.61	71.0
TraesCS3B01G407400.2	Wheat	cytosol, plastid	69.36	70.75
HORVU3Hr1G083780.10	Barley	cytosol	69.61	68.93
Zm00001d012286_P001	Maize	cytosol	70.1	68.59
TraesCS3A01G375200.3	Wheat	cytosol, plastid	69.85	67.38
Zm00001d042761_P001	Maize	mitochondrion	69.36	60.47
CDY00386	Canola	nucleus	37.99	25.79
KRH14903	Soybean	cytosol	26.47	20.77
KRH72755	Soybean	cytosol, endoplasmic reticulum	26.96	19.71
KRH73242	Soybean	cytosol	25.25	19.66
KRH17110	Soybean	cytosol	26.23	19.07

Protein Annotations

Gene3D:1.20.1270.60	EntrezGene:100804649	MapMan:22.5.5.3.5	Gene3D:3.30.1520.10	EMBL:ACUP02006165	InterPro:AH/BAR_dom_sf
ncoils:Coil	EnsemblPlantsGene:GLYMA_10G075200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0006810	GO:GO:0006897	GO:GO:0008150
GO:GO:0008289	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016050	GO:GO:0019898
GO:GO:0035091	UniProt:I1L9F5	InterPro:IPR001683	InterPro:IPR027267	InterPro:IPR036871	EnsemblPlants:KRH32778
ProteinID:KRH32778	ProteinID:KRH32778.1	PFAM:PF00787	PFAM:PF09325	PFscan:PS50195	PANTHER:PTHR10555
PANTHER:PTHR10555:SF170	InterPro:PX_dom_sf	InterPro:Phox	SMART:SM00312	SUPFAM:SSF103657	SUPFAM:SSF64268
UniParc:UPI00023C8DAB	InterPro:Vps5_C	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:7770459..7778365

Molecular Weight (calculated)

46752.2 Da

IEP (calculated)

8.576

GRAVY (calculated)

-0.525

Length

408 amino acids

Sequence
(BLAST)

001: MTIINMNPPQ RTLSGSSQSP RSPSSSSQPF LSVSVTDPVK LGNGVQAYIS YRVITKTNFP EYQGPEKIVI RRYSDFVWLR DRLFEKYKGI FIPPLPEKSA
101: VEKFRFSAEF IEMRRQALDV FVNRIASHHE LKQSEDLRLF LQAEEETMER LRSHETGIFK KKPADLMQIF KDVQSKVSDV VLGKEKPVEE SDPEYEKMKH
201: YIFELENHLA EAQKHAYRLV KRHRELGQSL SDFGKAVKLL GASEGNALGK AFSELGMKSE ILSAKLQKEA HQLLMNFEEP LKDYVHAVQS IKATIAERAN
301: AFRRQCELAE TMKLKEINLD KLMLIRSDKV AEAEHEYKEL KAESEQATKT FETIVKLMNE EMGRFQEQKT LDMGIAFHEF AKGQARLANG IADAWRSLLP
401: KLEACSSS

Best Arabidopsis Sequence Match ( AT5G06140.1 )
(BLAST)

001: MESTEQPRNI SGSMQSPRSP SSHPYLSVSV TDPVKLGNGV QAYISYRVIT KTNLPEYQGP EKIVIRRYSD FVWLRDRLFE KYKGIFIPPL PEKSAVEKFR
101: FSAEFIEMRR AALDIFVNRI ALHPELQQSE DLRTFLQADE ETMDRFRFQE TSIFKKPADL MQMFRDVQSK VSDAVLGKEK PVEETTADYE KLKHYIFELE
201: NHLTEAQKHA YRLVKRHREL GQSLLDFGKA VKLLGACEGE PTGKAFSDLG TKSELLSIKL QKEAQQVLMN FEEPLKDYVR YVQSIKATIA ERGTAFKQHC
301: ELSETTKLKE INLDKLMLTR SDKVGEAEIE YREIKAESEE ATRRFERIVK RMEDEIVRFQ EQKTEEMGVA FHQFAKGQAR LANSVADAWR SLLPKLEASY
401: SV

Arabidopsis Description

SNX1Sorting nexin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG38]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.