Factsheet for GSMUA_Achr10P04730_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr3P10000_001
GSMUA_Achr4P09530_001
GSMUA_Achr8P21250_001
GSMUA_Achr8P25320_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06140.1	GSMUA_Achr10P...	AT2G30330.1	20971704
AT5G06140.1	GSMUA_Achr10P...	AT5G06140.1	21156856
AT5G06140.1	GSMUA_Achr10P...	AT5G07120.1	21156856
AT5G06140.1	GSMUA_Achr11P...	AT5G07120.1	21156856
AT5G06140.1	GSMUA_Achr3P10000_001	AT5G07120.1	21156856
AT5G06140.1	GSMUA_Achr8P21250_001	AT5G07120.1	21156856
AT5G06140.1	GSMUA_Achr4P09530_001	AT5G49550.1	20971704
AT5G06140.1	GSMUA_Achr8P25320_001	AT5G49550.1	20971704
AT5G06140.1	GSMUA_Achr10P...	AT5G58440.1	21156856
AT5G06140.1	GSMUA_Achr11P...	AT5G58440.1	21156856
AT5G06140.1	GSMUA_Achr3P10000_001	AT5G58440.1	21156856
AT5G06140.1	GSMUA_Achr8P21250_001	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g02960.t01	Wine grape	plastid	78.02	78.8
Bra009166.1-P	Field mustard	cytosol	74.07	76.92
CDX98906	Canola	cytosol	74.07	76.92
CDY60440	Canola	cytosol	74.07	76.92
PGSC0003DMT400022861	Potato	cytosol	69.63	76.84
KRH32778	Soybean	plastid	76.05	75.49
Solyc09g010130.2.1	Tomato	plastid	54.32	74.58
TraesCS3B01G407400.2	Wheat	cytosol, plastid	73.58	74.5
TraesCS3D01G367700.1	Wheat	cytosol, plastid	73.33	74.25
EES03929	Sorghum	plastid	73.09	74.0
AT5G06140.1	Thale cress	cytosol	73.33	73.88
HORVU3Hr1G083780.10	Barley	cytosol	73.58	72.33
Os01t0862300-01	Rice	plasma membrane	71.11	72.18
TraesCS3A01G375200.3	Wheat	cytosol, plastid	73.83	70.69
Zm00001d012286_P001	Maize	cytosol	71.85	69.78
KRH72265	Soybean	plastid	75.56	67.11
Zm00001d042761_P001	Maize	mitochondrion	72.59	62.82
VIT_16s0039g01230.t01	Wine grape	cytosol, plastid	24.69	61.73
CDY00386	Canola	nucleus	36.3	24.46
GSMUA_Achr10P...	Banana	cytosol	22.96	18.31
GSMUA_Achr8P21250_001	Banana	cytosol	23.7	17.55
GSMUA_Achr11P...	Banana	nucleus	22.72	17.49
GSMUA_Achr3P10000_001	Banana	mitochondrion	23.21	17.38

Protein Annotations

Gene3D:1.20.1270.60	MapMan:22.5.5.3.5	Gene3D:3.30.1520.10	InterPro:AH/BAR_dom_sf	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768
GO:GO:0005771	GO:GO:0005829	GO:GO:0006623	GO:GO:0006810	GO:GO:0006896	GO:GO:0007275
GO:GO:0008150	GO:GO:0008289	GO:GO:0009605	GO:GO:0009606	GO:GO:0009628	GO:GO:0009958
GO:GO:0010252	GO:GO:0016020	GO:GO:0030904	GO:GO:0035091	GO:GO:0043231	GO:GO:0048364
EnsemblPlantsGene:GSMUA_Achr10G04730_001	EnsemblPlants:GSMUA_Achr10P04730_001	EnsemblPlants:GSMUA_Achr10T04730_001	InterPro:IPR001683	InterPro:IPR027267	InterPro:IPR036871
UniProt:M0RFF0	PFAM:PF00787	PFAM:PF09325	PFscan:PS50195	PANTHER:PTHR10555	PANTHER:PTHR10555:SF170
InterPro:PX_dom_sf	InterPro:Phox	SMART:SM00312	SUPFAM:SSF103657	SUPFAM:SSF64268	UniParc:UPI0002951E0C
InterPro:Vps5_C	SEG:seg	:	:	:	:

Description

Putative Sorting nexin-1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G04730_001]

Coordinates

chr10:+:14362013..14367891

Molecular Weight (calculated)

46558.8 Da

IEP (calculated)

7.684

GRAVY (calculated)

-0.548

Length

405 amino acids

Sequence
(BLAST)

001: MISPETSPPR SSSQSPRSPP AAPFLYISVT EPVKLGNGVQ AYISYRVITR TNLPEFQGPE KIVIRRYSDF VWLHDRLAEK YKGIFIPPLP EKSAVEKFRF
101: STEFIEMRRQ ALDIFINRIA SHPELKQSED LRTFLQEDEE TMERARSQET GIFKKPADLI QIFKDVQTKV SDVVLGKEKP VEETDPEYEK LKHYIFGLED
201: HLAETQKQAF RLVKRHRELG QSLSDFGKAM KLLGACEGNS LGKVFSELGA KSELLSIKLQ KEAHNLLMNF EEPLKDYVRA VQSIKVTFAD RANAFRQHCE
301: LAETTKLKEI NLDKLNLMRS DKVREAEMEY RELKSESEQA TRRFETIVRL MNEEIVRFQE QKTADMGLAF HQFAKGQAKL ANDIADAWRS VLPKIEACSV
401: SSQHG

Best Arabidopsis Sequence Match ( AT5G06140.1 )
(BLAST)

001: MESTEQPRNI SGSMQSPRSP SSHPYLSVSV TDPVKLGNGV QAYISYRVIT KTNLPEYQGP EKIVIRRYSD FVWLRDRLFE KYKGIFIPPL PEKSAVEKFR
101: FSAEFIEMRR AALDIFVNRI ALHPELQQSE DLRTFLQADE ETMDRFRFQE TSIFKKPADL MQMFRDVQSK VSDAVLGKEK PVEETTADYE KLKHYIFELE
201: NHLTEAQKHA YRLVKRHREL GQSLLDFGKA VKLLGACEGE PTGKAFSDLG TKSELLSIKL QKEAQQVLMN FEEPLKDYVR YVQSIKATIA ERGTAFKQHC
301: ELSETTKLKE INLDKLMLTR SDKVGEAEIE YREIKAESEE ATRRFERIVK RMEDEIVRFQ EQKTEEMGVA FHQFAKGQAR LANSVADAWR SLLPKLEASY
401: SV

Arabidopsis Description

SNX1Sorting nexin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG38]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.