Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr4P09530_001 | |
| GSMUA_Achr8P25320_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G30330.1 | GSMUA_Achr10P... | AT5G06140.1 | 20971704 |
| AT2G30330.1 | GSMUA_Achr4P09530_001 | AT5G49550.1 | 20971704 |
| AT2G30330.1 | GSMUA_Achr8P25320_001 | AT5G49550.1 | 20971704 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_06s0004g07760.t01 | Wine grape | cytosol, mitochondrion | 47.0 | 63.09 |
| Os11t0112300-01 | Rice | cytosol | 39.5 | 61.72 |
| EES07883 | Sorghum | cytosol | 42.0 | 61.31 |
| Solyc11g068450.1.1 | Tomato | cytosol | 40.0 | 60.61 |
| PGSC0003DMT400067769 | Potato | cytosol | 39.5 | 59.85 |
| KRH72791 | Soybean | cytosol | 39.5 | 58.09 |
| Os12t0416500-01 | Rice | cytosol | 28.0 | 54.9 |
| Bra022792.1-P | Field mustard | cytosol | 39.5 | 52.32 |
| AT2G30330.1 | Thale cress | cytosol | 37.5 | 49.34 |
| TraesCS5D01G144100.1 | Wheat | peroxisome | 29.5 | 46.09 |
| TraesCS5B01G147400.1 | Wheat | cytosol | 29.0 | 45.31 |
| Os12t0111900-00 | Rice | cytosol | 29.0 | 43.61 |
| HORVU5Hr1G046970.2 | Barley | cytosol | 30.0 | 42.25 |
| Zm00001d036838_P001 | Maize | cytosol, plastid | 17.0 | 39.08 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P29360_001 | EnsemblPlants:GSMUA_Achr10T29360_001 | EnsemblPlantsGene:GSMUA_Achr10G29360_001 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005829 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0031083 |
| GO:GO:0048364 | InterPro:BLOC1S1 | PANTHER:PTHR13073 | PFAM:PF06320 | SEG:seg | UniParc:UPI000294B22C |
| UniProt:M0RMG0 | MapMan:22.5.3.1 | : | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G29360_001]
Coordinates
chr10:+:31906622..31909734
Molecular Weight (calculated)
22853.5 Da
IEP (calculated)
8.237
GRAVY (calculated)
-0.333
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MWGPHDVTFD QTTRYEWVRV NGYYQVPLNP LPFICHLIPS ATAASIDRLF DGARPARRRL VALVDSFGGM EGAKAQMGSL ESSLLQIVQE HQQRSIWTRE
101: QTDKAKKNAL RTAMRVSELL VDTVNGGVEE SFINEKRVEL EIRALASTIM RYKKQTDQWL AASHALNTVI KEIGDFENWM KIMDFDCKSI NAAIRNIHQM
101: QTDKAKKNAL RTAMRVSELL VDTVNGGVEE SFINEKRVEL EIRALASTIM RYKKQTDQWL AASHALNTVI KEIGDFENWM KIMDFDCKSI NAAIRNIHQM
001: MNTPMSLSAA RGRMLPFLEK EKSEEESETL ESSLLQLIDD NRRSSLQLRE KTERSRKEAI RHAARTADLL VKAVNGGVEE CFVNEKRIES EIRNLAITVA
101: KFGKQTDQWL AVTHAVNSAV KEIGDFENWM KTMEFDCKKI TAAIRNIHED QQ
101: KFGKQTDQWL AVTHAVNSAV KEIGDFENWM KTMEFDCKKI TAAIRNIHED QQ
Arabidopsis Description
BLOS1Biogenesis of lysosome-related organelles complex 1 subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:O22929]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.