CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70009
CDX81034
CDX85416
CDX86228
CDX98906
CDX99005
CDY32985
CDY57026
CDY57386
CDY58875
CDY60440
CDY64756

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06140.1	CDX98906	AT5G06140.1	21156856
AT5G06140.1	CDY60440	AT5G06140.1	21156856
AT5G06140.1	CDX70009	AT5G07120.1	21156856
AT5G06140.1	CDX81034	AT5G07120.1	21156856
AT5G06140.1	CDX99005	AT5G07120.1	21156856
AT5G06140.1	CDY58875	AT5G07120.1	21156856
AT5G06140.1	CDX85416	AT5G49550.1	20971704
AT5G06140.1	CDX86228	AT5G49550.1	20971704
AT5G06140.1	CDY57026	AT5G49550.1	20971704
AT5G06140.1	CDY64756	AT5G49550.1	20971704
AT5G06140.1	CDY32985	AT5G58440.1	21156856
AT5G06140.1	CDY57386	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60440	Canola	cytosol	99.49	99.49
AT5G06140.1	Thale cress	cytosol	93.08	90.3
GSMUA_Achr10P...	Banana	cytosol, plastid	76.92	74.07
EES03929	Sorghum	plastid	72.31	70.5
Os01t0862300-01	Rice	plasma membrane	70.77	69.17
TraesCS3D01G367700.1	Wheat	cytosol, plastid	70.77	69.0
TraesCS3B01G407400.2	Wheat	cytosol, plastid	70.77	69.0
HORVU3Hr1G083780.10	Barley	cytosol	70.51	66.75
Zm00001d012286_P001	Maize	cytosol	71.03	66.43
TraesCS3A01G375200.3	Wheat	cytosol, plastid	71.03	65.48
VIT_16s0039g01230.t01	Wine grape	cytosol, plastid	27.18	65.43
Zm00001d042761_P001	Maize	mitochondrion	69.49	57.91
CDY00386	Canola	nucleus	45.38	29.45
CDX81034	Canola	cytosol	26.92	21.13
CDY58875	Canola	cytosol	26.92	20.43
CDX99005	Canola	cytosol	26.15	18.92
CDX70009	Canola	cytosol	25.9	18.88
CDY32985	Canola	cytosol	23.59	17.8
CDY57386	Canola	cytosol	24.62	17.17

Protein Annotations

Gene3D:1.20.1270.60	MapMan:22.5.5.3.5	Gene3D:3.30.1520.10	GO:A0A078ECJ5	InterPro:AH/BAR_dom_sf	EnsemblPlants:CDX98906
ProteinID:CDX98906	ProteinID:CDX98906.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0008289
GO:GO:0035091	EnsemblPlantsGene:GSBRNA2T00107012001	InterPro:IPR001683	InterPro:IPR027267	InterPro:IPR036871	PFAM:PF00787
PFAM:PF09325	PFscan:PS50195	PANTHER:PTHR10555	PANTHER:PTHR10555:SF170	InterPro:PX_dom_sf	InterPro:Phox
SMART:SM00312	SUPFAM:SSF103657	SUPFAM:SSF64268	UniParc:UPI0004EE8B12	InterPro:Vps5_C	:

Description

BnaC09g49290D

Coordinates

chrLK031907:-:522881..525975

Molecular Weight (calculated)

45037.0 Da

IEP (calculated)

7.684

GRAVY (calculated)

-0.553

Length

390 amino acids

Sequence
(BLAST)

001: MQSPRSPSSQ PYLSASVTDP VKLGNGVQAY ISYRVITKTN LPEYQGPEKI VIRRYSDFVW LRDRLFEKYK GVFVPPLPEK SAVEKFRFSA EFIEMRRAAL
101: DIFVNRIASH PELQQSEDLR TFLQADEETM ERFRFQETGI FNKKPADFMQ MFRDVQSKVS DAVLGKEKPV EETTPEYEKL KHYIFELENH LAEAQKHAYR
201: LVKRHRELGQ SLLDFGKAVK LLGACEGEPT GKLFSDLGTK SELVSIKLQK EAQQVLMNFE EPLKDYVRYV QSIKATIAER ATAFKQHCEL AETTKLKEIN
301: LDKLMLTRSD KVGEAEIEYR EMKAESEEAT IRFERIVKRM NEEIVRFQEQ KTEEMGVAFH QFAKGQARLA NGIADTWRAL LPKLEAASSA

Best Arabidopsis Sequence Match ( AT5G06140.1 )
(BLAST)

001: MESTEQPRNI SGSMQSPRSP SSHPYLSVSV TDPVKLGNGV QAYISYRVIT KTNLPEYQGP EKIVIRRYSD FVWLRDRLFE KYKGIFIPPL PEKSAVEKFR
101: FSAEFIEMRR AALDIFVNRI ALHPELQQSE DLRTFLQADE ETMDRFRFQE TSIFKKPADL MQMFRDVQSK VSDAVLGKEK PVEETTADYE KLKHYIFELE
201: NHLTEAQKHA YRLVKRHREL GQSLLDFGKA VKLLGACEGE PTGKAFSDLG TKSELLSIKL QKEAQQVLMN FEEPLKDYVR YVQSIKATIA ERGTAFKQHC
301: ELSETTKLKE INLDKLMLTR SDKVGEAEIE YREIKAESEE ATRRFERIVK RMEDEIVRFQ EQKTEEMGVA FHQFAKGQAR LANSVADAWR SLLPKLEASY
401: SV

Arabidopsis Description

SNX1Sorting nexin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG38]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.