CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70009
CDX81034
CDX98906
CDX99005
CDY32985
CDY57386
CDY58875
CDY60440

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07120.1	CDX98906	AT5G06140.1	21156856
AT5G07120.1	CDY60440	AT5G06140.1	21156856
AT5G07120.1	CDX70009	AT5G07120.1	21156856
AT5G07120.1	CDX81034	AT5G07120.1	21156856
AT5G07120.1	CDX99005	AT5G07120.1	21156856
AT5G07120.1	CDY58875	AT5G07120.1	21156856
AT5G07120.1	CDY32985	AT5G58440.1	21156856
AT5G07120.1	CDY57386	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009291.1-P	Field mustard	cytosol	93.64	93.3
CDX99005	Canola	cytosol	93.08	92.39
CDX81034	Canola	cytosol	74.39	80.08
CDY58875	Canola	cytosol	73.08	76.07
AT5G07120.1	Thale cress	cytosol	79.07	73.95
CDY57386	Canola	cytosol	76.26	72.99
CDY32985	Canola	cytosol	66.17	68.47
Solyc09g031590.2.1	Tomato	cytosol	4.11	64.71
VIT_06s0004g07430.t01	Wine grape	cytosol	67.1	64.57
KRH72755	Soybean	cytosol, endoplasmic reticulum	66.54	63.8
KRH17110	Soybean	cytosol	65.42	62.39
GSMUA_Achr10P...	Banana	cytosol	56.26	59.25
GSMUA_Achr8P21250_001	Banana	cytosol	60.37	59.05
GSMUA_Achr3P10000_001	Banana	mitochondrion	56.82	56.19
TraesCS1B01G235000.1	Wheat	cytosol, plastid	55.51	56.04
TraesCS1D01G223500.1	Wheat	cytosol, plastid	54.95	55.47
TraesCS1A01G221800.1	Wheat	cytosol, plastid	54.02	54.53
Os05t0346100-01	Rice	plasma membrane	54.77	54.26
GSMUA_Achr11P...	Banana	nucleus	52.52	53.42
Zm00001d038007_P001	Maize	extracellular	53.27	51.54
EES18029	Sorghum	cytosol	52.9	51.45
HORVU1Hr1G060480.2	Barley	plastid	55.33	50.43
Os01t0827200-01	Rice	cytosol, extracellular	39.25	41.67
Zm00001d043022_P001	Maize	cytosol	38.32	40.12
Zm00001d010604_P008	Maize	cytosol, plastid	38.13	40.0
TraesCS1B01G307500.1	Wheat	cytosol	38.5	39.85
TraesCS3A01G347900.1	Wheat	cytosol	37.94	39.73
TraesCS3D01G341500.1	Wheat	cytosol	37.94	39.73
OQU87773	Sorghum	cytosol	38.13	39.69
TraesCS3B01G379800.1	Wheat	cytosol	37.76	39.53
TraesCS1A01G298000.1	Wheat	cytosol	37.76	39.15
TraesCS1D01G293200.1	Wheat	cytosol	37.57	39.03
OQU78173	Sorghum	cytosol	32.52	38.33
Zm00001d038449_P001	Maize	cytosol	37.94	26.92
CDX98906	Canola	cytosol	18.88	25.9
CDY60440	Canola	cytosol	18.69	25.64
CDY00386	Canola	nucleus	11.21	9.98

Protein Annotations

Gene3D:1.20.1270.60	MapMan:22.5.5.3.6	Gene3D:3.30.1520.10	GO:A0A078C1E1	InterPro:AH/BAR_dom_sf	EnsemblPlants:CDX70009
ProteinID:CDX70009	ProteinID:CDX70009.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0008289
GO:GO:0035091	EnsemblPlantsGene:GSBRNA2T00136103001	InterPro:IPR001683	InterPro:IPR027267	InterPro:IPR036871	PFAM:PF00787
PFAM:PF09325	PFscan:PS50195	PANTHER:PTHR10555	PANTHER:PTHR10555:SF201	InterPro:PX_dom_sf	InterPro:Phox
SMART:SM00312	SUPFAM:SSF64268	UniParc:UPI0004EF17EE	InterPro:Vps5_C	SEG:seg	:

Description

BnaA10g23580D

Coordinates

chrLK031790:-:2678135..2680456

Molecular Weight (calculated)

59684.9 Da

IEP (calculated)

4.903

GRAVY (calculated)

-0.600

Length

535 amino acids

Sequence
(BLAST)

001: MMGSENDDEA HLHASTDDME NLFLRDDADK SNSPPPITVT PADSDPLSAT PQSKPNGGDS RSYIEPPSYA DVIFSPFDDT SEINGSDDTH SSDYSLSRSP
101: SSSASSDYIK ITVSSPQKEQ ETSTSMLSGG GTYITYLITT RTNLPDYGGG SEFSVRRRFR DVVTLADRLA ESYRGFCIPP RPDKSVVESQ VMQKQEFVEQ
201: RRVALEKYLR RLVAHPVIRS SDEVKVFLRV EGKLPLQASA DVASRMLDGA VKLPRQLFGE GGGGVETARG GRDLLRLFKE LRQSVSNDWG GSKPLVVEED
301: RDFLEKKEKM VDLEQQIINA SQQAETLVKA QQEMGETMGE LGLAFIKLTK FENEEAVFNS QRARANDMKN LATAAVKASR FYRELNSQTV KHLDTLHDYL
401: GLMLAVQGAF ADRSSALLTV QTLLSELSSL EGRAEKLEAA LSKVFGGDKS RIKKIEEIKE TIRNTEDAKN VAIREYERIK ENNWSEVERL DRERRADFLS
501: MMKGFVVNQV GYAEKIASVW TKAAEETSQY DRESS

Best Arabidopsis Sequence Match ( AT5G07120.2 )
(BLAST)

001: MMGSENDEES HLHSSKEEME KLFLREDGDP LTKSNVNGDK SNSNYRSAMS TLFDSRHPSI VVTPADSDPL FAPPSYYSES RSPRSKPNGG DRVSSYLEPP
101: SYADVIFSPF DDISEINGSE DGHSQSSDSL SRSPSSLSSD YIKITVSNPQ KEQEATNSMI PGGSTYITYQ ITTRTNLSDY GGSEFSVRRR FRDIVTLADR
201: LAESYRGFCI PPRPDKSIVE SQVMQKQEFV EQRRVALEKY LRRLVAHPVI RNSDELKVFL QAQGKLPLAT STDVASRMLD GAVKLPKQLF GEGGGASSVE
301: VVQPGRGGRD FLRMFKELRQ SVSNDWGGSK PPVVEEDKEF LEKKEKMYDL EQQIINASQQ AESLVKAQQD MGETMGELGL AFIKLTKFEN EEAVFNSQRA
401: RANDMKNLAT SAVKASRFYR ELNSQTVKHL DTLHDYLGLM MAVQGAFADR SSALLTVQTL LSELSSLEAR AEKLEVASSK VFGGDKSRIK KIEELKETIK
501: VTEDSKNVAI REYEQIKENN WSEVERLDRE RRADFLNMMK GFVANQVGYA EKIANVWTKV AEETRQYDRE SS

Arabidopsis Description

SNX2BSorting nexin 2B [Source:UniProtKB/Swiss-Prot;Acc:B9DFS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.