Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- peroxisome 1
- plastid 2
- cytosol 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
OQU78173 | Sorghum | cytosol | 47.88 | 79.52 |
Zm00001d010604_P008 | Maize | cytosol, plastid | 51.72 | 76.47 |
TraesCS1B01G307500.1 | Wheat | cytosol | 46.15 | 67.31 |
TraesCS1A01G298000.1 | Wheat | cytosol | 45.89 | 67.05 |
TraesCS1D01G293200.1 | Wheat | cytosol | 44.56 | 65.24 |
Zm00001d043022_P001 | Maize | cytosol | 37.27 | 54.99 |
CDX81034 | Canola | cytosol | 26.92 | 40.85 |
GSMUA_Achr11P... | Banana | nucleus | 27.85 | 39.92 |
Bra005925.1-P | Field mustard | cytosol | 26.39 | 38.72 |
Solyc06g050550.2.1 | Tomato | plastid | 27.72 | 38.63 |
VIT_06s0004g07430.t01 | Wine grape | cytosol | 28.38 | 38.49 |
PGSC0003DMT400061516 | Potato | cytosol | 27.59 | 38.45 |
Solyc09g031590.2.1 | Tomato | cytosol | 1.72 | 38.24 |
CDY58875 | Canola | cytosol | 25.99 | 38.13 |
CDX70009 | Canola | cytosol | 26.92 | 37.94 |
CDX99005 | Canola | cytosol | 27.06 | 37.85 |
CDY32985 | Canola | cytosol | 25.73 | 37.52 |
KRH14903 | Soybean | cytosol | 25.86 | 37.5 |
KRH72755 | Soybean | cytosol, endoplasmic reticulum | 27.59 | 37.28 |
Bra009291.1-P | Field mustard | cytosol | 26.53 | 37.24 |
KRH73242 | Soybean | cytosol | 25.73 | 37.02 |
KRH17110 | Soybean | cytosol | 27.45 | 36.9 |
Zm00001d038007_P001 | Maize | extracellular | 27.06 | 36.89 |
Bra002651.1-P | Field mustard | cytosol | 27.06 | 36.69 |
CDY57386 | Canola | cytosol | 27.19 | 36.67 |
VIT_13s0067g01990.t01 | Wine grape | cytosol | 26.79 | 36.07 |
AT5G07120.1 | Thale cress | cytosol | 26.92 | 35.49 |
Solyc09g031600.2.1 | Tomato | cytosol | 21.88 | 34.88 |
AT5G58440.1 | Thale cress | cytosol | 26.92 | 34.58 |
Zm00001d012286_P001 | Maize | cytosol | 11.41 | 20.62 |
Zm00001d042761_P001 | Maize | mitochondrion | 12.2 | 19.66 |
Protein Annotations
Gene3D:1.20.1270.60 | EntrezGene:100277081 | EntrezGene:100857058 | MapMan:22.5.5.3.6 | Gene3D:3.20.20.100 | Gene3D:3.30.1520.10 |
UniProt:A0A1D6M6E0 | InterPro:AH/BAR_dom_sf | ProteinID:AQK86649.1 | InterPro:Aldo/ket_reductase_CS | InterPro:Aldo/keto_reductase | ncoils:Coil |
GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 |
GO:GO:0016491 | GO:GO:0035091 | GO:GO:0055114 | InterPro:IPR001683 | InterPro:IPR027267 | InterPro:IPR036812 |
InterPro:IPR036871 | InterPro:NADP_OxRdtase_dom | InterPro:NADP_OxRdtase_dom_sf | PFAM:PF00248 | PFAM:PF00787 | PFAM:PF09325 |
PRINTS:PR00069 | ScanProsite:PS00062 | PFscan:PS50195 | PANTHER:PTHR10555 | PANTHER:PTHR10555:SF146 | InterPro:PX_dom_sf |
InterPro:Phox | SMART:SM00312 | SUPFAM:SSF51430 | SUPFAM:SSF64268 | UniParc:UPI00084551FC | InterPro:Vps5_C |
EnsemblPlantsGene:Zm00001d038449 | EnsemblPlants:Zm00001d038449_P001 | EnsemblPlants:Zm00001d038449_T001 | SEG:seg | : | : |
Description
Sorting nexin 2B
Coordinates
chr6:+:157427258..157434499
Molecular Weight (calculated)
83408.4 Da
IEP (calculated)
7.540
GRAVY (calculated)
-0.417
Length
754 amino acids
Sequence
(BLAST)
(BLAST)
001: MMAAEPSPSV PSTAAEDMET LALDSSSSSA AATASASDPL LRPPTSPTAA ASDDPFVIDD FLDEDDFTAP PPSVAGPPPA VLGDAASPVF PKITVSDPKK
101: HAEPSGGGAA GVIPGSGSYF SYLITTRFAG GGGEVRVRRR FRDVVALADG LAAAHRGLFV PARPDKSVLE GQVLQRHNFV SQRCAALQRY LCRLAAHPIV
201: GQSPGLRTFL TEPGAIPAFQ SEAPRYWTTT VNAAAPMVQM KAGRDLFGMF KGLKQTMVNG MVATKPPPVE QETDTEFLAH KARFEDLQQQ LTTTSQQAEA
301: LVKAQDGYRE TTGHLGMTLI KLAKFEREQA TCNSLRRRSG EIHNFANSVL KMSRSQIKLN SEIVKHLGSI HEYLEMMISV HHAFTDRSNA LHYVQILSAD
401: LFSLHIRARR LESSSARDMG HEWSTYQKVE GLKETIRSAE AAKSDAVREY ESIKENNKIE IKRFDKERRH DFIEMLKGFV ITQVSYSDHF ANMWTKAGYR
501: HVDTAAQYGV EKEPSQRPKQ QVVTVCRKTS CVDQVGRGLK AAMEGGINRK DLFVTSKLWL KDGAHMPPEA GEVLEFDMEG VWREMEGLVK DGLVKDIGVC
601: NYTVAKLNRL MRSANVPPAV CQMEMHPGWK NDRIFEACKK HGIHVTAYSP LGSSEKNLAH DPLVEKVANK LDKTPGQVLL RWALQRGTSV IPKSTRDERI
701: KENIQVFGWE IPEEDFRALC GIKDEKRVLT GEELFVNKTH GPYKSATEVW DHED
101: HAEPSGGGAA GVIPGSGSYF SYLITTRFAG GGGEVRVRRR FRDVVALADG LAAAHRGLFV PARPDKSVLE GQVLQRHNFV SQRCAALQRY LCRLAAHPIV
201: GQSPGLRTFL TEPGAIPAFQ SEAPRYWTTT VNAAAPMVQM KAGRDLFGMF KGLKQTMVNG MVATKPPPVE QETDTEFLAH KARFEDLQQQ LTTTSQQAEA
301: LVKAQDGYRE TTGHLGMTLI KLAKFEREQA TCNSLRRRSG EIHNFANSVL KMSRSQIKLN SEIVKHLGSI HEYLEMMISV HHAFTDRSNA LHYVQILSAD
401: LFSLHIRARR LESSSARDMG HEWSTYQKVE GLKETIRSAE AAKSDAVREY ESIKENNKIE IKRFDKERRH DFIEMLKGFV ITQVSYSDHF ANMWTKAGYR
501: HVDTAAQYGV EKEPSQRPKQ QVVTVCRKTS CVDQVGRGLK AAMEGGINRK DLFVTSKLWL KDGAHMPPEA GEVLEFDMEG VWREMEGLVK DGLVKDIGVC
601: NYTVAKLNRL MRSANVPPAV CQMEMHPGWK NDRIFEACKK HGIHVTAYSP LGSSEKNLAH DPLVEKVANK LDKTPGQVLL RWALQRGTSV IPKSTRDERI
701: KENIQVFGWE IPEEDFRALC GIKDEKRVLT GEELFVNKTH GPYKSATEVW DHED
001: MAHATFTSEG QNMESFRLLS GHKIPAVGLG TWRSGSQAAH AVVTAIVEGG YRHIDTAWEY GDQREVGQGI KRAMHAGLER RDLFVTSKLW CTELSPERVR
101: PALQNTLKEL QLEYLDLYLI HWPIRLREGA SKPPKAGDVL DFDMEGVWRE MENLSKDSLV RNIGVCNFTV TKLNKLLGFA ELIPAVCQME MHPGWRNDRI
201: LEFCKKNEIH VTAYSPLGSQ EGGRDLIHDQ TVDRIAKKLN KTPGQILVKW GLQRGTSVIP KSLNPERIKE NIKVFDWVIP EQDFQALNSI TDQKRVIDGE
301: DLFVNKTEGP FRSVADLWDH ED
101: PALQNTLKEL QLEYLDLYLI HWPIRLREGA SKPPKAGDVL DFDMEGVWRE MENLSKDSLV RNIGVCNFTV TKLNKLLGFA ELIPAVCQME MHPGWRNDRI
201: LEFCKKNEIH VTAYSPLGSQ EGGRDLIHDQ TVDRIAKKLN KTPGQILVKW GLQRGTSVIP KSLNPERIKE NIKVFDWVIP EQDFQALNSI TDQKRVIDGE
301: DLFVNKTEGP FRSVADLWDH ED
Arabidopsis Description
NAD(P)-linked oxidoreductase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K9G7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.