Factsheet for Bra002651.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002651.1-P
Bra005925.1-P
Bra009166.1-P
Bra009291.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58440.1	Bra009166.1-P	AT5G06140.1	21156856
AT5G58440.1	Bra005925.1-P	AT5G07120.1	21156856
AT5G58440.1	Bra009291.1-P	AT5G07120.1	21156856
AT5G58440.1	Bra002651.1-P	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32985	Canola	cytosol	88.49	95.16
AT5G58440.1	Thale cress	cytosol	83.27	78.88
Bra009291.1-P	Field mustard	cytosol	74.1	76.72
Bra005925.1-P	Field mustard	cytosol	68.7	74.32
VIT_06s0004g07430.t01	Wine grape	cytosol	66.91	66.91
KRH72755	Soybean	cytosol, endoplasmic reticulum	65.47	65.23
KRH17110	Soybean	cytosol	65.29	64.71
GSMUA_Achr8P21250_001	Banana	cytosol	61.51	62.52
Solyc09g031590.2.1	Tomato	cytosol	3.78	61.76
GSMUA_Achr10P...	Banana	cytosol	55.76	61.02
GSMUA_Achr3P10000_001	Banana	mitochondrion	56.65	58.23
TraesCS1B01G235000.1	Wheat	cytosol, plastid	54.14	56.79
TraesCS1D01G223500.1	Wheat	cytosol, plastid	53.42	56.04
TraesCS1A01G221800.1	Wheat	cytosol, plastid	52.7	55.28
Os05t0346100-01	Rice	plasma membrane	53.6	55.19
GSMUA_Achr11P...	Banana	nucleus	51.8	54.75
EES18029	Sorghum	cytosol	51.8	52.36
Zm00001d038007_P001	Maize	extracellular	51.8	52.08
HORVU1Hr1G060480.2	Barley	plastid	53.24	50.43
TraesCS1B01G307500.1	Wheat	cytosol	38.49	41.39
Os01t0827200-01	Rice	cytosol, extracellular	37.05	40.87
Zm00001d010604_P008	Maize	cytosol, plastid	37.23	40.59
TraesCS1A01G298000.1	Wheat	cytosol	37.59	40.5
TraesCS3B01G379800.1	Wheat	cytosol	36.87	40.12
TraesCS3A01G347900.1	Wheat	cytosol	36.69	39.92
TraesCS3D01G341500.1	Wheat	cytosol	36.69	39.92
OQU78173	Sorghum	cytosol	32.55	39.87
TraesCS1D01G293200.1	Wheat	cytosol	36.87	39.81
Zm00001d043022_P001	Maize	cytosol	36.33	39.53
OQU87773	Sorghum	cytosol	35.43	38.33
Zm00001d038449_P001	Maize	cytosol	36.69	27.06
Bra009166.1-P	Field mustard	cytosol	17.09	24.36

Protein Annotations

Gene3D:1.20.1270.60	MapMan:22.5.5.3.6	Gene3D:3.30.1520.10	InterPro:AH/BAR_dom_sf	EnsemblPlantsGene:Bra002651	EnsemblPlants:Bra002651.1
EnsemblPlants:Bra002651.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005829	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009791	GO:GO:0016020	GO:GO:0019538
GO:GO:0032502	GO:GO:0032585	GO:GO:0035091	GO:GO:0043621	GO:GO:0051604	GO:GO:0090351
InterPro:IPR001683	InterPro:IPR027267	InterPro:IPR036871	UniProt:M4CEM0	PFAM:PF00787	PFAM:PF09325
PFscan:PS50195	PANTHER:PTHR10555	PANTHER:PTHR10555:SF201	InterPro:PX_dom_sf	InterPro:Phox	SMART:SM00312
SUPFAM:SSF64268	UniParc:UPI000254534F	InterPro:Vps5_C	SEG:seg	:	:

Description

AT5G58440 (E=1e-230) SNX2a | SNX2a (SORTING NEXIN 2a); phosphoinositide binding

Coordinates

chrA10:-:8385961..8388302

Molecular Weight (calculated)

61825.7 Da

IEP (calculated)

4.902

GRAVY (calculated)

-0.553

Length

556 amino acids

Sequence
(BLAST)

001: MMGSENADVF EETNLNAAKE EMENLVLNGS DVNGDSSNSA YRSAMSTLSN VHDPLSPLPT VLTPADSDPL TAPSSYIEPP SYADVIFSPF DETSDSEING
101: GEDSSLSPDS LSRSPSSSSS DYIKITVSNP QKEQETSNSI VGGNTYITYQ ITTRTNLPDF GVSESSVRRR FRDVVTLADR LAESYRGFCI PPRPDKSVVE
201: SQVMQKQEFV EQRRVALEKY LRRLSAHPVI RKSDELKVFL QVQGKLPLPM STDVASRMLD GAVKLPKQLF GEGGASAVPV HEVVQPARGG RDLLRLFKEL
301: RQSVSNDWGG SKPAVVEEDK EFLEKKEKML DLEQQIINSS QQAESLVKAQ QDMGETMGEL GLAFIKLTKF ENEEAVFNSQ RTRATDMKNL ATAAVKASRF
401: YRELNSQTVK HLDTLHEYLG MMMAVQGAFA DRSSALLTVQ TLLSELSSLQ ARAEKLEAAS SKVFGGDKSR IRKIEELKEA IKVTEDAKNV AIREYERIKD
501: NNRSEVERLD GERRADFMNM MKGFVVNQVG YAEKISNVWA KAAEETSQYD REKQSS

Best Arabidopsis Sequence Match ( AT5G58440.1 )
(BLAST)

001: MMGSENADGF EETNLNAQRD DMENLDLGVD GGDHPLKISD VNGDTSNSGY RSAMSTLSNV RDPLSPPPTV MIPADSDPLL APSSYEDFRS SFSSKPISSD
101: NSYIEPPSYA DVIFSPFDEN SDSEINGTED NSLHSQFSDS LSRSPSSSSS DYIKITVSNP QKEQEISNSI VGGNTYITYQ ITTRTNLPDF GGPSEFSVRR
201: RFRDVVTLAD RLAETYRGFC IPPRPDKSVV ESQVMQKQEF VEQRRVALEK YLRRLSAHPV IRNSDELKVF LQVQGKLPLP MSTDVASRML DGAVKLPKQL
301: FGEGGASAVP VTEVGQPARG GRDLLRLFKE LRQSVSNDWG GSKPPVVEED KEFLEKKEKM HDLEQQIINA SQQAESLVKA QQDMGETMGE LGLAFIKLTK
401: FENEEAVCNP QRTRANDMKN LATAAVKASR FYRELNSQTV KHLDTLHEYL GMMMAVQGAF ADRSSALLTV QTLLSELPSL QTRVEKLEAA SSKVFGGDKS
501: RIRKIEELKE TIKVTEDAKN VAIKGYERIK ENNRSEVERL DRERRADFMN MMKGFVVNQV GYAEKMGNVW AKVAEETSQY DREKQSS

Arabidopsis Description

SNX2ASNX2a [Source:UniProtKB/TrEMBL;Acc:A0A178UPE2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.