CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES03929
EES18029
OQU78173
OQU87773

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07120.1	EES03929	AT5G06140.1	21156856
AT5G07120.1	EES18029	AT5G07120.1	21156856
AT5G07120.1	OQU78173	AT5G07120.1	21156856
AT5G07120.1	OQU87773	AT5G07120.1	21156856
AT5G07120.1	EES18029	AT5G58440.1	21156856
AT5G07120.1	OQU78173	AT5G58440.1	21156856
AT5G07120.1	OQU87773	AT5G58440.1	21156856
AT5G58440.1	EES03929	AT5G06140.1	21156856
AT5G58440.1	EES18029	AT5G07120.1	21156856
AT5G58440.1	OQU78173	AT5G07120.1	21156856
AT5G58440.1	OQU87773	AT5G07120.1	21156856
AT5G58440.1	EES18029	AT5G58440.1	21156856
AT5G58440.1	OQU78173	AT5G58440.1	21156856
AT5G58440.1	OQU87773	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038007_P001	Maize	extracellular	84.36	83.91
TraesCS1D01G223500.1	Wheat	cytosol, plastid	74.36	77.17
TraesCS1B01G235000.1	Wheat	cytosol, plastid	74.18	76.98
TraesCS1A01G221800.1	Wheat	cytosol, plastid	72.36	75.09
Os05t0346100-01	Rice	plasma membrane	73.09	74.44
HORVU1Hr1G060480.2	Barley	plastid	74.0	69.34
GSMUA_Achr8P21250_001	Banana	cytosol	60.18	60.51
KRH14903	Soybean	cytosol	55.45	58.65
GSMUA_Achr10P...	Banana	cytosol	53.64	58.07
KRH73242	Soybean	cytosol	55.27	58.02
GSMUA_Achr3P10000_001	Banana	mitochondrion	54.91	55.82
Solyc06g050550.2.1	Tomato	plastid	54.55	55.45
KRH17110	Soybean	cytosol	56.36	55.26
KRH72755	Soybean	cytosol, endoplasmic reticulum	56.0	55.2
VIT_13s0067g01990.t01	Wine grape	cytosol	56.0	55.0
PGSC0003DMT400061516	Potato	cytosol	54.0	54.9
VIT_06s0004g07430.t01	Wine grape	cytosol	55.45	54.86
CDX81034	Canola	cytosol	49.45	54.73
Bra005925.1-P	Field mustard	cytosol	50.0	53.5
CDY58875	Canola	cytosol	49.82	53.31
Solyc09g031590.2.1	Tomato	cytosol	3.27	52.94
CDX70009	Canola	cytosol	51.45	52.9
CDX99005	Canola	cytosol	51.82	52.88
CDY57386	Canola	cytosol	52.91	52.06
Bra009291.1-P	Field mustard	cytosol	50.73	51.96
Bra002651.1-P	Field mustard	cytosol	52.36	51.8
AT5G07120.1	Thale cress	cytosol	53.09	51.05
Solyc09g031600.2.1	Tomato	cytosol	43.09	50.11
CDY32985	Canola	cytosol	45.82	48.74
AT5G58440.1	Thale cress	cytosol	52.0	48.72
OQU87773	Sorghum	cytosol	37.82	40.47
OQU78173	Sorghum	cytosol	33.09	40.09
EES03929	Sorghum	plastid	18.18	25.0

Protein Annotations

Gene3D:1.20.1270.60	MapMan:22.5.5.3.6	Gene3D:3.30.1520.10	EntrezGene:8066781	InterPro:AH/BAR_dom_sf	UniProt:C5YW84
ncoils:Coil	EnsemblPlants:EES18029	ProteinID:EES18029	ProteinID:EES18029.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0006810
GO:GO:0006897	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0016050	GO:GO:0019898	GO:GO:0035091	InterPro:IPR001683	InterPro:IPR027267	InterPro:IPR036871
PFAM:PF00787	PFAM:PF09325	PFscan:PS50195	PANTHER:PTHR10555	PANTHER:PTHR10555:SF201	InterPro:PX_dom_sf
InterPro:Phox	SMART:SM00312	EnsemblPlantsGene:SORBI_3009G101300	SUPFAM:SSF103657	SUPFAM:SSF64268	UniParc:UPI0001A88BD2
InterPro:Vps5_C	RefSeq:XP_002439599.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:40453827..40458593

Molecular Weight (calculated)

60155.6 Da

IEP (calculated)

5.790

GRAVY (calculated)

-0.434

Length

550 amino acids

Sequence
(BLAST)

001: MMSSAPPSEP ATAGDDDDME SLPLAAASDY ASVASTFDPL LSSTSATAAS PRSPPTRAAA FTLSSTFSSS FVDPPSYADA TGAGAGSSSP RSASSPSSAS
101: PRSARLAASE YSLLAVSDPE TEAEPAATSL VPGSGPTFVS YLVTSVHRRD PDQRRHSVRR RFRDFVTLAD RLAEAFRGHF VPPRPDKNTV ESQVMQRDEF
201: VAQRRAALER YLWRLAEHPA IGPSDELRVF LHAEGKMPLP GSTDMASRML DGAARLPRQL IAGEDAVAPP QEVVQPAKGG RDLLRIFKEL KQSVVTDWAG
301: VKPPLVEEDR EFLEKKNKLQ EWEQQLTSAS QQAEALVKAQ QDMAETMGAL GLAFVRLTKF ETEEAMYDSQ RIRAADSRRV ATAAVKSSRA CRDLNAQTVK
401: YLDTLHEHLS IMLSVHTAFS DRASALLTVQ TLMSDVASLQ SRIEKLEVAS SKIFGGDRAR TRKVEELKET IRATEDAKFC ALREYERIKE NNRSELQRLD
501: SERKQDFLVM LKGFVASQAA YAEKIVDGWE TVAEETSGYV RARGSDSIAS

Best Arabidopsis Sequence Match ( AT5G07120.2 )
(BLAST)

001: MMGSENDEES HLHSSKEEME KLFLREDGDP LTKSNVNGDK SNSNYRSAMS TLFDSRHPSI VVTPADSDPL FAPPSYYSES RSPRSKPNGG DRVSSYLEPP
101: SYADVIFSPF DDISEINGSE DGHSQSSDSL SRSPSSLSSD YIKITVSNPQ KEQEATNSMI PGGSTYITYQ ITTRTNLSDY GGSEFSVRRR FRDIVTLADR
201: LAESYRGFCI PPRPDKSIVE SQVMQKQEFV EQRRVALEKY LRRLVAHPVI RNSDELKVFL QAQGKLPLAT STDVASRMLD GAVKLPKQLF GEGGGASSVE
301: VVQPGRGGRD FLRMFKELRQ SVSNDWGGSK PPVVEEDKEF LEKKEKMYDL EQQIINASQQ AESLVKAQQD MGETMGELGL AFIKLTKFEN EEAVFNSQRA
401: RANDMKNLAT SAVKASRFYR ELNSQTVKHL DTLHDYLGLM MAVQGAFADR SSALLTVQTL LSELSSLEAR AEKLEVASSK VFGGDKSRIK KIEELKETIK
501: VTEDSKNVAI REYEQIKENN WSEVERLDRE RRADFLNMMK GFVANQVGYA EKIANVWTKV AEETRQYDRE SS

Arabidopsis Description

SNX2BSorting nexin 2B [Source:UniProtKB/Swiss-Prot;Acc:B9DFS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.