CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73242	Soybean	cytosol	90.96	90.27
Solyc06g050550.2.1	Tomato	plastid	68.85	66.17
PGSC0003DMT400061516	Potato	cytosol	68.85	66.17
VIT_13s0067g01990.t01	Wine grape	cytosol	69.42	64.46
GSMUA_Achr8P21250_001	Banana	cytosol	63.85	60.69
GSMUA_Achr10P...	Banana	cytosol	58.08	59.45
KRH17110	Soybean	cytosol	63.85	59.18
KRH72755	Soybean	cytosol, endoplasmic reticulum	63.27	58.96
Os05t0346100-01	Rice	plasma membrane	58.65	56.48
GSMUA_Achr3P10000_001	Banana	mitochondrion	58.27	56.01
EES18029	Sorghum	cytosol	58.65	55.45
TraesCS1D01G223500.1	Wheat	cytosol, plastid	56.35	55.28
TraesCS1B01G235000.1	Wheat	cytosol, plastid	56.15	55.09
Zm00001d038007_P001	Maize	extracellular	57.5	54.07
TraesCS1A01G221800.1	Wheat	cytosol, plastid	55.0	53.96
GSMUA_Achr11P...	Banana	nucleus	53.85	53.23
HORVU1Hr1G060480.2	Barley	plastid	56.15	49.74
Os01t0827200-01	Rice	cytosol, extracellular	40.58	41.87
Zm00001d043022_P001	Maize	cytosol	40.38	41.1
OQU87773	Sorghum	cytosol	40.58	41.05
TraesCS3A01G347900.1	Wheat	cytosol	39.81	40.51
TraesCS3B01G379800.1	Wheat	cytosol	39.62	40.31
Zm00001d010604_P008	Maize	cytosol, plastid	39.23	40.0
TraesCS1D01G293200.1	Wheat	cytosol	39.62	40.0
TraesCS3D01G341500.1	Wheat	cytosol	39.23	39.92
TraesCS1B01G307500.1	Wheat	cytosol	39.42	39.65
TraesCS1A01G298000.1	Wheat	cytosol	38.65	38.95
OQU78173	Sorghum	cytosol	33.46	38.33
KRH32778	Soybean	plastid	20.77	26.47
Zm00001d038449_P001	Maize	cytosol	37.5	25.86
KRH72265	Soybean	plastid	20.58	23.46

Protein Annotations

Gene3D:1.20.1270.60	EntrezGene:100792216	MapMan:22.5.5.3.6	Gene3D:3.30.1520.10	EMBL:ACUP02008540	InterPro:AH/BAR_dom_sf
ncoils:Coil	EnsemblPlantsGene:GLYMA_14G056000	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0006810	GO:GO:0006897	GO:GO:0008150
GO:GO:0008289	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016050	GO:GO:0019898
GO:GO:0035091	InterPro:IPR001683	InterPro:IPR027267	InterPro:IPR036871	UniProt:K7M540	EnsemblPlants:KRH14903
ProteinID:KRH14903	ProteinID:KRH14903.1	PFAM:PF00787	PFAM:PF09325	PFscan:PS50195	PANTHER:PTHR10555
PANTHER:PTHR10555:SF155	InterPro:PX_dom_sf	InterPro:Phox	SMART:SM00312	SUPFAM:SSF103657	SUPFAM:SSF64268
UniParc:UPI000233B3DF	InterPro:Vps5_C	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr14:-:4435359..4441028

Molecular Weight (calculated)

58649.0 Da

IEP (calculated)

5.347

GRAVY (calculated)

-0.530

Length

520 amino acids

Sequence
(BLAST)

001: MMNHDSNNEQ HQILHVSQDD EIMESLILDD DSSSVQQHHR PTSPQSPNSP FNSFLDPPSY ADAIFTSFDS NGHDQAIESP AARSGSEDYL HISVTDPQKE
101: QDIATSLVPG AAAFYTYLIT TRTNLPEYGG IGAEFAVRRR FRDVVTLSDR LSEAYRGFFI PVRPDKSTVE SQVMQKQEFV EQRRVALEKY LRKLAAHPVI
201: GRSEELRLFL EAKGRLPLAK TFDVASRMLD GAVRLPRQLF GGEAELGEVA QPAKGGRDLL RIFKELKQSV ANDWVGSKPL VVEEDKEFME RKDKLVDFEH
301: HLSNVSQQAE SLVKFQQDMG ETVGELGLAF VKLTKFETEE AIFESQRVRA ADMRNVATAA VKASRLYREL NTQTIKHLDK LHEYLGTMLA VNNAFSDRSS
401: ALLTVQTLSS ELASLHSRVE KLEVASSKIF GGDKSRMRKI EELKEAIRVT ENAKICADRE YERIKENNRS ELERIDQERN SDFLSMLRGF VVNQAGYAEK
501: TASVWEKLAE ETAAYSSDSS

Best Arabidopsis Sequence Match ( AT5G06140.1 )
(BLAST)

001: MESTEQPRNI SGSMQSPRSP SSHPYLSVSV TDPVKLGNGV QAYISYRVIT KTNLPEYQGP EKIVIRRYSD FVWLRDRLFE KYKGIFIPPL PEKSAVEKFR
101: FSAEFIEMRR AALDIFVNRI ALHPELQQSE DLRTFLQADE ETMDRFRFQE TSIFKKPADL MQMFRDVQSK VSDAVLGKEK PVEETTADYE KLKHYIFELE
201: NHLTEAQKHA YRLVKRHREL GQSLLDFGKA VKLLGACEGE PTGKAFSDLG TKSELLSIKL QKEAQQVLMN FEEPLKDYVR YVQSIKATIA ERGTAFKQHC
301: ELSETTKLKE INLDKLMLTR SDKVGEAEIE YREIKAESEE ATRRFERIVK RMEDEIVRFQ EQKTEEMGVA FHQFAKGQAR LANSVADAWR SLLPKLEASY
401: SV

Arabidopsis Description

SNX1Sorting nexin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG38]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.