Factsheet for VIT_13s0067g01990.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061516	Potato	cytosol	68.21	70.61
Solyc06g050550.2.1	Tomato	plastid	67.5	69.87
KRH14903	Soybean	cytosol	64.46	69.42
KRH73242	Soybean	cytosol	63.75	68.13
VIT_06s0004g07430.t01	Wine grape	cytosol	67.5	67.99
GSMUA_Achr8P21250_001	Banana	cytosol	63.75	65.27
GSMUA_Achr10P...	Banana	cytosol	56.96	62.8
GSMUA_Achr3P10000_001	Banana	mitochondrion	59.64	61.74
TraesCS1B01G235000.1	Wheat	cytosol, plastid	56.96	60.19
TraesCS1D01G223500.1	Wheat	cytosol, plastid	56.79	60.0
Os05t0346100-01	Rice	plasma membrane	55.71	57.78
TraesCS1A01G221800.1	Wheat	cytosol, plastid	54.29	57.36
GSMUA_Achr11P...	Banana	nucleus	52.68	56.08
EES18029	Sorghum	cytosol	55.0	56.0
Zm00001d038007_P001	Maize	extracellular	54.82	55.52
HORVU1Hr1G060480.2	Barley	plastid	56.07	53.49
Os01t0827200-01	Rice	cytosol, extracellular	38.57	42.86
OQU87773	Sorghum	cytosol	38.04	41.44
TraesCS1B01G307500.1	Wheat	cytosol	38.21	41.39
Zm00001d010604_P008	Maize	cytosol, plastid	37.68	41.37
Zm00001d043022_P001	Maize	cytosol	37.32	40.9
TraesCS3B01G379800.1	Wheat	cytosol	37.32	40.9
TraesCS3A01G347900.1	Wheat	cytosol	37.14	40.7
TraesCS1D01G293200.1	Wheat	cytosol	37.14	40.39
TraesCS1A01G298000.1	Wheat	cytosol	37.14	40.31
TraesCS3D01G341500.1	Wheat	cytosol	36.61	40.12
OQU78173	Sorghum	cytosol	31.79	39.21
VIT_16s0039g01230.t01	Wine grape	cytosol, plastid	8.57	29.63
Zm00001d038449_P001	Maize	cytosol	36.07	26.79
VIT_08s0007g02960.t01	Wine grape	plastid	18.57	25.94

Protein Annotations

Gene3D:1.20.1270.60	EntrezGene:100251814	wikigene:100251814	MapMan:22.5.5.3.6	Gene3D:3.30.1520.10	InterPro:AH/BAR_dom_sf
ProteinID:CCB49825	ProteinID:CCB49825.1	ncoils:Coil	UniProt:F6HCA1	EMBL:FN595514	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768
GO:GO:0006810	GO:GO:0006897	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0016050	GO:GO:0019898	GO:GO:0035091	InterPro:IPR001683	InterPro:IPR027267
InterPro:IPR036871	EntrezGene:LOC100251814	wikigene:LOC100251814	PFAM:PF00787	PFAM:PF09325	PFscan:PS50195
PANTHER:PTHR10555	PANTHER:PTHR10555:SF155	InterPro:PX_dom_sf	InterPro:Phox	SMART:SM00312	SUPFAM:SSF64268
TIGR:TC65395	UniParc:UPI00015CA861	ArrayExpress:VIT_13s0067g01990	EnsemblPlantsGene:VIT_13s0067g01990	EnsemblPlants:VIT_13s0067g01990.t01	InterPro:Vps5_C
unigene:Vvi.3137	RefSeq:XP_002273943	RefSeq:XP_002273943.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr13:+:1107377..1138015

Molecular Weight (calculated)

62870.0 Da

IEP (calculated)

5.674

GRAVY (calculated)

-0.599

Length

560 amino acids

Sequence
(BLAST)

001: MMGYENQGYE EAHLYASREE METLVLDEPS NGHHLSDHRS IVSLHEAHHT LSPPAAVISA VDDPLVSSSS TSSVDHKNPN LPFNSFLEPP SYADVIFNSF
101: DESNGDTNGH ESPKSLPRSA SSNSDYLNIS VTEPHREQEM SNSLVPGGNT YVTYLITTRT NLPDFGGPGS EFSVRRRFKD VVTLSDRMSE SYRGFFIPVR
201: PDKSVVESQV MQKQEFVEQR RSALEKYLRR LAGHPMIKKS EELRVFLRVD GKLPLPRSTD VASRMLDGAV KLPKQLFGES VAPANPQEVM QPAKGGRDLL
301: RIFKELKQAV SNDWGGSKPP VVEEDKEFLE RKDKLMDFEQ QLSNVSQQAE SLVKAQQDIG ETMGELGLAF VKLTKFETEE ALYNSQRVRA ADMKNLATAS
401: VKASRLYREL NAQTVKHLDT LHEYLGVMLA VNSAFSDRAS ALLTVQTLLS ELSSLHTRIE KLEAASSKIF GGDRSRIRKI EELKETLKVS EDAKNCAVRE
501: YEQIKENNRN ELERLDKERH DDFLSMLKGF VVNQAGYAEK MANVWEKVAE ETSGYAKDGS

Best Arabidopsis Sequence Match ( AT5G58440.1 )
(BLAST)

001: MMGSENADGF EETNLNAQRD DMENLDLGVD GGDHPLKISD VNGDTSNSGY RSAMSTLSNV RDPLSPPPTV MIPADSDPLL APSSYEDFRS SFSSKPISSD
101: NSYIEPPSYA DVIFSPFDEN SDSEINGTED NSLHSQFSDS LSRSPSSSSS DYIKITVSNP QKEQEISNSI VGGNTYITYQ ITTRTNLPDF GGPSEFSVRR
201: RFRDVVTLAD RLAETYRGFC IPPRPDKSVV ESQVMQKQEF VEQRRVALEK YLRRLSAHPV IRNSDELKVF LQVQGKLPLP MSTDVASRML DGAVKLPKQL
301: FGEGGASAVP VTEVGQPARG GRDLLRLFKE LRQSVSNDWG GSKPPVVEED KEFLEKKEKM HDLEQQIINA SQQAESLVKA QQDMGETMGE LGLAFIKLTK
401: FENEEAVCNP QRTRANDMKN LATAAVKASR FYRELNSQTV KHLDTLHEYL GMMMAVQGAF ADRSSALLTV QTLLSELPSL QTRVEKLEAA SSKVFGGDKS
501: RIRKIEELKE TIKVTEDAKN VAIKGYERIK ENNRSEVERL DRERRADFMN MMKGFVVNQV GYAEKMGNVW AKVAEETSQY DREKQSS

Arabidopsis Description

SNX2ASNX2a [Source:UniProtKB/TrEMBL;Acc:A0A178UPE2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.