Factsheet for VIT_08s0007g02960.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32778	Soybean	plastid	87.53	86.03
PGSC0003DMT400022861	Potato	cytosol	77.31	84.47
Solyc09g010130.2.1	Tomato	plastid	61.6	83.73
GSMUA_Achr10P...	Banana	cytosol, plastid	78.8	78.02
KRH72265	Soybean	plastid	88.03	77.41
VIT_16s0039g01230.t01	Wine grape	cytosol, plastid	30.92	76.54
EES03929	Sorghum	plastid	74.31	74.5
TraesCS3D01G367700.1	Wheat	cytosol, plastid	73.32	73.5
TraesCS3B01G407400.2	Wheat	cytosol, plastid	73.07	73.25
Os01t0862300-01	Rice	plasma membrane	72.32	72.68
HORVU3Hr1G083780.10	Barley	cytosol	73.32	71.36
TraesCS3A01G375200.3	Wheat	cytosol, plastid	73.57	69.74
Zm00001d012286_P001	Maize	cytosol	72.07	69.3
Zm00001d042761_P001	Maize	mitochondrion	71.32	61.11
CDY00386	Canola	nucleus	40.65	27.12
VIT_13s0067g01990.t01	Wine grape	cytosol	25.94	18.57
VIT_06s0004g07430.t01	Wine grape	cytosol	24.69	17.81

Protein Annotations

Gene3D:1.20.1270.60	EntrezGene:100244258	wikigene:100244258	MapMan:22.5.5.3.5	Gene3D:3.30.1520.10	InterPro:AH/BAR_dom_sf
ProteinID:CBI30329	ProteinID:CBI30329.3	ncoils:Coil	UniProt:D7TJA3	EMBL:FN595991	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768
GO:GO:0006810	GO:GO:0006897	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0016050	GO:GO:0019898	GO:GO:0035091	InterPro:IPR001683	InterPro:IPR027267
InterPro:IPR036871	EntrezGene:LOC100244258	wikigene:LOC100244258	PFAM:PF00787	PFAM:PF09325	PFscan:PS50195
PANTHER:PTHR10555	PANTHER:PTHR10555:SF170	InterPro:PX_dom_sf	InterPro:Phox	SMART:SM00312	SUPFAM:SSF103657
SUPFAM:SSF64268	UniParc:UPI0001BE3999	ArrayExpress:VIT_08s0007g02960	EnsemblPlantsGene:VIT_08s0007g02960	EnsemblPlants:VIT_08s0007g02960.t01	InterPro:Vps5_C
unigene:Vvi.19261	RefSeq:XP_002282010	RefSeq:XP_002282010.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:+:17033444..17043390

Molecular Weight (calculated)

45954.2 Da

IEP (calculated)

8.420

GRAVY (calculated)

-0.518

Length

401 amino acids

Sequence
(BLAST)

001: MISTQRSGSG SSQSPRSPSA QPFLSVSVTD PVKLGNGVQA YISYRVITKT NLPEYQGQEK IVIRRYSDFV WLRDRLFEKY KGIFVPPLPE KSAVEKFRFS
101: AEFIEMRRQA LDIFVNRIAS HHELQQSEDL RTFLQADEET MERARSQETG IFKKKPADLM QIFKDVQSRV SDVVLGKEKP VEESNPEYEK MKHYIFELEN
201: HLAEAQKHAY RLVKRHRELG QSLSDFGKAV KILGACEGNG LGKAFSELGT KSEMISIKLQ KEAHHLLMNF EEPLKDYVRA VQSIKATIAE RANAFRLQCE
301: LAETIKLKEI NLDKLMLTRS DRVGEAEIEY KELKAESEEA TKRFETIVRL MNEEIVRFQE QKTLDMGLAF HEFAKGQARL ANGIADAWRS LIPKLESCSP
401: A

Best Arabidopsis Sequence Match ( AT5G06140.1 )
(BLAST)

001: MESTEQPRNI SGSMQSPRSP SSHPYLSVSV TDPVKLGNGV QAYISYRVIT KTNLPEYQGP EKIVIRRYSD FVWLRDRLFE KYKGIFIPPL PEKSAVEKFR
101: FSAEFIEMRR AALDIFVNRI ALHPELQQSE DLRTFLQADE ETMDRFRFQE TSIFKKPADL MQMFRDVQSK VSDAVLGKEK PVEETTADYE KLKHYIFELE
201: NHLTEAQKHA YRLVKRHREL GQSLLDFGKA VKLLGACEGE PTGKAFSDLG TKSELLSIKL QKEAQQVLMN FEEPLKDYVR YVQSIKATIA ERGTAFKQHC
301: ELSETTKLKE INLDKLMLTR SDKVGEAEIE YREIKAESEE ATRRFERIVK RMEDEIVRFQ EQKTEEMGVA FHQFAKGQAR LANSVADAWR SLLPKLEASY
401: SV

Arabidopsis Description

SNX1Sorting nexin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG38]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.