CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60440	Canola	cytosol	29.62	45.64
Solyc09g010130.2.1	Tomato	plastid	22.3	45.42
CDX98906	Canola	cytosol	29.45	45.38
VIT_08s0007g02960.t01	Wine grape	plastid	27.12	40.65
PGSC0003DMT400022861	Potato	cytosol	23.29	38.15
KRH32778	Soybean	plastid	25.79	37.99
TraesCS3D01G367700.1	Wheat	cytosol, plastid	25.12	37.75
EES03929	Sorghum	plastid	25.12	37.75
TraesCS3B01G407400.2	Wheat	cytosol, plastid	24.96	37.5
Os01t0862300-01	Rice	plasma membrane	24.63	37.09
HORVU3Hr1G083780.10	Barley	cytosol	25.29	36.89
GSMUA_Achr10P...	Banana	cytosol, plastid	24.46	36.3
TraesCS3A01G375200.3	Wheat	cytosol, plastid	25.12	35.7
KRH72265	Soybean	plastid	26.79	35.31
Zm00001d012286_P001	Maize	cytosol	24.13	34.77
Zm00001d042761_P001	Maize	mitochondrion	25.12	32.27
CDX81034	Canola	cytosol	10.82	13.08
CDY58875	Canola	cytosol	10.65	12.45
CDX99005	Canola	cytosol	10.32	11.5
CDY57386	Canola	cytosol	10.48	11.27
CDX70009	Canola	cytosol	9.98	11.21
CDY32985	Canola	cytosol	8.65	10.06

Protein Annotations

Gene3D:1.20.1270.60	MapMan:35.1	GO:A0A078EGY4	InterPro:AH/BAR_dom_sf	EnsemblPlants:CDY00386	ProteinID:CDY00386
ProteinID:CDY00386.1	InterPro:EF_Hand_1_Ca_BS	InterPro:GAUT	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0016740	GO:GO:0046983	GO:GO:0047262
EnsemblPlantsGene:GSBRNA2T00110010001	InterPro:HATC_C_dom	InterPro:IPR003656	InterPro:IPR027267	PFAM:PF05699	PFAM:PF09325
ScanProsite:PS00018	PANTHER:PTHR32116	PANTHER:PTHR32116:SF27	InterPro:RNaseH-like_sf	SMART:SM00614	SUPFAM:SSF53098
UniParc:UPI0004EEF826	InterPro:Vps5_C	InterPro:Znf_BED	SEG:seg	:	:

Description

BnaC07g14400D

Coordinates

chrLK031918:-:425824..429766

Molecular Weight (calculated)

69280.7 Da

IEP (calculated)

8.379

GRAVY (calculated)

-0.501

Length

601 amino acids

Sequence
(BLAST)

001: MDDETLNLYD DDDDDYLSGN EMMDLNEDGH DSVQDDSTSV AGNRVRRRRK RRHSKCWKHF EIVGDKLPDG TTKLICKHCE YSYFIDLSNG TNTLLRHSRV
101: CSKNPGSTPR SRKFDMMVFR EMIAGAIVEH DLAYLLAWKL SRMACDVLSI PITTVSSESS FSAGSRVLSK YRSRLLPSNV QALICGRNWL RGFEVTSDSD
201: EKEEEEEKEG EEKEGEEEGG RKKRSNSAAS LRQRHYDHEA KAITQSLEGQ MSSVTEKSAK YAQIAAEEVP KSLYCLGVRL TFRTLSYRGS YAVASKLTHN
301: SLYHFCVFSD NIVDTSVVVN STALNSKFSI SLVLSYRFLI TIMVVDSSLG IFTLDIFVNW IALHPELQHS EDLRTFLQAD EETMERFRFR ETGIFKAKPA
401: DLMQMFRFRV NTIISYLAIP WVEIHNARSR HLTFSDAARG KEKPVEETTP EYEKLKHYVF ELENHLAEAQ KHAYRLVKRH RELGQSLLDF GKAVKLLRAC
501: EGEPTGKAFS DLGTKSELLS IKLQKVAQQV LMSFEEPLKD YVRYVQSIKE ATIRFERMVK RMKRDSEVLN AQLYLFIRPC KTNYKRMMFF NKQKNGGRLI
601: W

Best Arabidopsis Sequence Match ( AT5G06140.1 )
(BLAST)

001: MESTEQPRNI SGSMQSPRSP SSHPYLSVSV TDPVKLGNGV QAYISYRVIT KTNLPEYQGP EKIVIRRYSD FVWLRDRLFE KYKGIFIPPL PEKSAVEKFR
101: FSAEFIEMRR AALDIFVNRI ALHPELQQSE DLRTFLQADE ETMDRFRFQE TSIFKKPADL MQMFRDVQSK VSDAVLGKEK PVEETTADYE KLKHYIFELE
201: NHLTEAQKHA YRLVKRHREL GQSLLDFGKA VKLLGACEGE PTGKAFSDLG TKSELLSIKL QKEAQQVLMN FEEPLKDYVR YVQSIKATIA ERGTAFKQHC
301: ELSETTKLKE INLDKLMLTR SDKVGEAEIE YREIKAESEE ATRRFERIVK RMEDEIVRFQ EQKTEEMGVA FHQFAKGQAR LANSVADAWR SLLPKLEASY
401: SV

Arabidopsis Description

SNX1Sorting nexin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG38]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.