Factsheet for Os01t0827200-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 26072143

msms PMID: 26072143 doi

B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0827200-01
Os01t0862300-01
Os05t0346100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07120.1	Os01t0862300-01	AT5G06140.1	21156856
AT5G07120.1	Os01t0827200-01	AT5G07120.1	21156856
AT5G07120.1	Os05t0346100-01	AT5G07120.1	21156856
AT5G07120.1	Os01t0827200-01	AT5G58440.1	21156856
AT5G07120.1	Os05t0346100-01	AT5G58440.1	21156856
AT5G58440.1	Os01t0862300-01	AT5G06140.1	21156856
AT5G58440.1	Os01t0827200-01	AT5G07120.1	21156856
AT5G58440.1	Os05t0346100-01	AT5G07120.1	21156856
AT5G58440.1	Os01t0827200-01	AT5G58440.1	21156856
AT5G58440.1	Os05t0346100-01	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G347900.1	Wheat	cytosol	61.31	60.47
TraesCS3D01G341500.1	Wheat	cytosol	61.31	60.47
TraesCS3B01G379800.1	Wheat	cytosol	60.71	59.88
Zm00001d043022_P001	Maize	cytosol	60.32	59.49
OQU87773	Sorghum	cytosol	60.32	59.14
Solyc09g031590.2.1	Tomato	cytosol	3.57	52.94
CDX81034	Canola	cytosol	40.87	41.45
GSMUA_Achr11P...	Banana	nucleus	42.86	41.06
CDY58875	Canola	cytosol	41.87	41.05
KRH14903	Soybean	cytosol	41.87	40.58
Bra005925.1-P	Field mustard	cytosol	41.27	40.47
PGSC0003DMT400061516	Potato	cytosol	43.25	40.3
Solyc06g050550.2.1	Tomato	plastid	43.06	40.11
KRH73242	Soybean	cytosol	41.67	40.08
Os05t0346100-01	Rice	plasma membrane	42.46	39.63
CDX70009	Canola	cytosol	41.67	39.25
VIT_06s0004g07430.t01	Wine grape	cytosol	42.86	38.85
CDX99005	Canola	cytosol	41.47	38.78
KRH72755	Soybean	cytosol, endoplasmic reticulum	42.86	38.71
VIT_13s0067g01990.t01	Wine grape	cytosol	42.86	38.57
KRH17110	Soybean	cytosol	42.86	38.5
Bra009291.1-P	Field mustard	cytosol	40.87	38.36
CDY57386	Canola	cytosol	41.27	37.21
CDY32985	Canola	cytosol	38.1	37.14
Bra002651.1-P	Field mustard	cytosol	40.87	37.05
Solyc09g031600.2.1	Tomato	cytosol	34.72	37.0
AT5G07120.1	Thale cress	cytosol	41.67	36.71
AT5G58440.1	Thale cress	cytosol	42.26	36.29
Os01t0862300-01	Rice	plasma membrane	17.26	21.8

Protein Annotations

Gene3D:1.20.1270.60	MapMan:22.5.5.3.6	Gene3D:3.30.1520.10	InterPro:AH/BAR_dom_sf	ProteinID:BAD73617.1	ProteinID:BAF06592.2
ProteinID:BAS75025.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0006810	GO:GO:0006897	GO:GO:0008150
GO:GO:0008289	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016050	GO:GO:0019898
GO:GO:0035091	InterPro:IPR001683	InterPro:IPR027267	InterPro:IPR036871	EnsemblPlantsGene:Os01g0827200	EnsemblPlants:Os01t0827200-01
PFAM:PF00787	PFAM:PF09325	PFscan:PS50195	PANTHER:PTHR10555	PANTHER:PTHR10555:SF146	InterPro:PX_dom_sf
InterPro:Phox	UniProt:Q5QLT5	SMART:SM00312	SUPFAM:SSF103657	SUPFAM:SSF64268	UniParc:UPI000048E006
InterPro:Vps5_C	SEG:seg	:	:	:	:

Description

Phox-like domain containing protein. (Os01t0827200-01)

Coordinates

chr1:-:35396166..35400138

Molecular Weight (calculated)

54894.7 Da

IEP (calculated)

6.407

GRAVY (calculated)

-0.417

Length

504 amino acids

Sequence
(BLAST)

001: MVGADAESSA VVDAGEGHGD LALDSSSAAS TDPLLHPPPS PSSTPSSPTA IADHDAFIEE DGEDDSAPHV PSASDEAAPE FVQITVSEPK KHAEPAAGAA
101: GVIPGSGSYF SYLITTRAAD GGLFRVRRRF RDVVALADRL AAAYRGLFVP ARPDKSIVEG QVMQRHEFVN QRCAALQRYL GRLAAHPTIG RSAELHDFLT
201: EPSGIPTSAG ESPRSDPALS AAMSAAAVTA PTAPAKPGRD IFGMFKDLKQ TVANGLVAVR PPPVEEETDA KFVMHKAKLE YFEQHLTTAS QQVEALLKAY
301: DDLKATTGQL GMTFIKLAKF EKEQDTCNSQ RKRAVDMSNF ANAVINMSRS QTKLNAKIEI HLGTIYEYLE TMTSVRNAFT DRANALLRVQ SLSGDLFLLH
401: TQAAKLESVS SRGMGQERLR YQKIEELKET IRKTEDAKGN ARQEYELIKE NNMNEIIRFN KEKRHGLVEM LKGFVRNQVS YSEHISSIWT KVAEETTGYT
501: GKGS

Best Arabidopsis Sequence Match ( AT5G07120.2 )
(BLAST)

001: MMGSENDEES HLHSSKEEME KLFLREDGDP LTKSNVNGDK SNSNYRSAMS TLFDSRHPSI VVTPADSDPL FAPPSYYSES RSPRSKPNGG DRVSSYLEPP
101: SYADVIFSPF DDISEINGSE DGHSQSSDSL SRSPSSLSSD YIKITVSNPQ KEQEATNSMI PGGSTYITYQ ITTRTNLSDY GGSEFSVRRR FRDIVTLADR
201: LAESYRGFCI PPRPDKSIVE SQVMQKQEFV EQRRVALEKY LRRLVAHPVI RNSDELKVFL QAQGKLPLAT STDVASRMLD GAVKLPKQLF GEGGGASSVE
301: VVQPGRGGRD FLRMFKELRQ SVSNDWGGSK PPVVEEDKEF LEKKEKMYDL EQQIINASQQ AESLVKAQQD MGETMGELGL AFIKLTKFEN EEAVFNSQRA
401: RANDMKNLAT SAVKASRFYR ELNSQTVKHL DTLHDYLGLM MAVQGAFADR SSALLTVQTL LSELSSLEAR AEKLEVASSK VFGGDKSRIK KIEELKETIK
501: VTEDSKNVAI REYEQIKENN WSEVERLDRE RRADFLNMMK GFVANQVGYA EKIANVWTKV AEETRQYDRE SS

Arabidopsis Description

SNX2BSorting nexin 2B [Source:UniProtKB/Swiss-Prot;Acc:B9DFS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.