Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX99005 | Canola | cytosol | 74.83 | 79.41 |
| CDX70009 | Canola | cytosol | 73.95 | 79.07 |
| CDX81034 | Canola | cytosol | 68.01 | 78.27 |
| Bra009291.1-P | Field mustard | cytosol | 72.2 | 76.91 |
| Bra005925.1-P | Field mustard | cytosol | 68.53 | 76.26 |
| CDY58875 | Canola | cytosol | 67.66 | 75.29 |
| AT5G58440.1 | Thale cress | cytosol | 72.9 | 71.04 |
| VIT_06s0004g07430.t01 | Wine grape | cytosol | 63.81 | 65.65 |
| Solyc09g031590.2.1 | Tomato | cytosol | 3.85 | 64.71 |
| KRH17110 | Soybean | cytosol | 62.76 | 63.99 |
| KRH72755 | Soybean | cytosol, endoplasmic reticulum | 62.06 | 63.62 |
| GSMUA_Achr8P21250_001 | Banana | cytosol | 58.04 | 60.69 |
| GSMUA_Achr10P... | Banana | cytosol | 53.67 | 60.43 |
| GSMUA_Achr3P10000_001 | Banana | mitochondrion | 54.37 | 57.49 |
| TraesCS1B01G235000.1 | Wheat | cytosol, plastid | 52.8 | 56.98 |
| TraesCS1D01G223500.1 | Wheat | cytosol, plastid | 52.45 | 56.6 |
| TraesCS1A01G221800.1 | Wheat | cytosol, plastid | 51.05 | 55.09 |
| Os05t0346100-01 | Rice | plasma membrane | 51.75 | 54.81 |
| GSMUA_Achr11P... | Banana | nucleus | 50.17 | 54.56 |
| EES18029 | Sorghum | cytosol | 51.05 | 53.09 |
| Zm00001d038007_P001 | Maize | extracellular | 50.17 | 51.9 |
| HORVU1Hr1G060480.2 | Barley | plastid | 51.75 | 50.43 |
| Os01t0827200-01 | Rice | cytosol, extracellular | 36.71 | 41.67 |
| Zm00001d010604_P008 | Maize | cytosol, plastid | 36.71 | 41.18 |
| TraesCS1B01G307500.1 | Wheat | cytosol | 37.06 | 41.01 |
| TraesCS3B01G379800.1 | Wheat | cytosol | 36.19 | 40.51 |
| TraesCS1A01G298000.1 | Wheat | cytosol | 36.54 | 40.5 |
| TraesCS1D01G293200.1 | Wheat | cytosol | 36.36 | 40.39 |
| Zm00001d043022_P001 | Maize | cytosol | 36.01 | 40.31 |
| TraesCS3A01G347900.1 | Wheat | cytosol | 36.01 | 40.31 |
| OQU87773 | Sorghum | cytosol | 36.19 | 40.27 |
| TraesCS3D01G341500.1 | Wheat | cytosol | 35.84 | 40.12 |
| OQU78173 | Sorghum | cytosol | 31.12 | 39.21 |
| Zm00001d038449_P001 | Maize | cytosol | 35.49 | 26.92 |
| AT5G06140.1 | Thale cress | cytosol | 18.18 | 25.87 |
Protein Annotations
| Gene3D:1.20.1270.60 | MapMan:22.5.5.3.6 | Gene3D:3.30.1520.10 | EntrezGene:830603 | ProteinID:AED91112.1 | InterPro:AH/BAR_dom_sf |
| EMBL:AK220586 | EMBL:AK230282 | EMBL:AK316886 | ProteinID:ANM70224.1 | ArrayExpress:AT5G07120 | EnsemblPlantsGene:AT5G07120 |
| RefSeq:AT5G07120 | TAIR:AT5G07120 | RefSeq:AT5G07120-TAIR-G | EnsemblPlants:AT5G07120.1 | TAIR:AT5G07120.1 | Unigene:At.69715 |
| UniProt:B9DFS6 | ProteinID:CAB87268.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005543 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 |
| GO:GO:0005794 | GO:GO:0005829 | GO:GO:0006810 | GO:GO:0006897 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010008 | GO:GO:0015031 |
| GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016050 | GO:GO:0016192 | GO:GO:0019538 | GO:GO:0019898 |
| GO:GO:0030904 | GO:GO:0031902 | GO:GO:0032502 | GO:GO:0032585 | GO:GO:0035091 | GO:GO:0045324 |
| GO:GO:0046982 | GO:GO:0051604 | GO:GO:0090351 | InterPro:IPR001683 | InterPro:IPR027267 | InterPro:IPR036871 |
| RefSeq:NP_001331853.1 | RefSeq:NP_196329.2 | PFAM:PF00787 | PFAM:PF09325 | PO:PO:0000005 | PO:PO:0000016 |
| PO:PO:0000034 | PO:PO:0000293 | PO:PO:0009046 | PO:PO:0009049 | PFscan:PS50195 | PANTHER:PTHR10555 |
| PANTHER:PTHR10555:SF201 | InterPro:PX_dom_sf | InterPro:Phox | SMART:SM00312 | Symbol:SNX2b | SUPFAM:SSF64268 |
| UniParc:UPI0000196C0F | InterPro:Vps5_C | SEG:seg | : | : | : |
Description
SNX2BSorting nexin 2B [Source:UniProtKB/Swiss-Prot;Acc:B9DFS6]
Coordinates
chr5:-:2206894..2209556
Molecular Weight (calculated)
64285.4 Da
IEP (calculated)
5.226
GRAVY (calculated)
-0.671
Length
572 amino acids
Sequence
(BLAST)
(BLAST)
001: MMGSENDEES HLHSSKEEME KLFLREDGDP LTKSNVNGDK SNSNYRSAMS TLFDSRHPSI VVTPADSDPL FAPPSYYSES RSPRSKPNGG DRVSSYLEPP
101: SYADVIFSPF DDISEINGSE DGHSQSSDSL SRSPSSLSSD YIKITVSNPQ KEQEATNSMI PGGSTYITYQ ITTRTNLSDY GGSEFSVRRR FRDIVTLADR
201: LAESYRGFCI PPRPDKSIVE SQVMQKQEFV EQRRVALEKY LRRLVAHPVI RNSDELKVFL QAQGKLPLAT STDVASRMLD GAVKLPKQLF GEGGGASSVE
301: VVQPGRGGRD FLRMFKELRQ SVSNDWGGSK PPVVEEDKEF LEKKEKMYDL EQQIINASQQ AESLVKAQQD MGETMGELGL AFIKLTKFEN EEAVFNSQRA
401: RANDMKNLAT SAVKASRFYR ELNSQTVKHL DTLHDYLGLM MAVQGAFADR SSALLTVQTL LSELSSLEAR AEKLEVASSK VFGGDKSRIK KIEELKETIK
501: VTEDSKNVAI REYEQIKENN WSEVERLDRE RRADFLNMMK GFVANQVGYA EKIANVWTKV AEETRQYDRE SS
101: SYADVIFSPF DDISEINGSE DGHSQSSDSL SRSPSSLSSD YIKITVSNPQ KEQEATNSMI PGGSTYITYQ ITTRTNLSDY GGSEFSVRRR FRDIVTLADR
201: LAESYRGFCI PPRPDKSIVE SQVMQKQEFV EQRRVALEKY LRRLVAHPVI RNSDELKVFL QAQGKLPLAT STDVASRMLD GAVKLPKQLF GEGGGASSVE
301: VVQPGRGGRD FLRMFKELRQ SVSNDWGGSK PPVVEEDKEF LEKKEKMYDL EQQIINASQQ AESLVKAQQD MGETMGELGL AFIKLTKFEN EEAVFNSQRA
401: RANDMKNLAT SAVKASRFYR ELNSQTVKHL DTLHDYLGLM MAVQGAFADR SSALLTVQTL LSELSSLEAR AEKLEVASSK VFGGDKSRIK KIEELKETIK
501: VTEDSKNVAI REYEQIKENN WSEVERLDRE RRADFLNMMK GFVANQVGYA EKIANVWTKV AEETRQYDRE SS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.