Factsheet for AT5G06140.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98906	Canola	cytosol	90.3	93.08
CDY60440	Canola	cytosol	90.3	93.08
Bra009166.1-P	Field mustard	cytosol	90.05	92.82
PGSC0003DMT400022861	Potato	cytosol	71.39	78.2
KRH32778	Soybean	plastid	78.61	77.45
Solyc09g010130.2.1	Tomato	plastid	55.22	75.25
GSMUA_Achr10P...	Banana	cytosol, plastid	73.88	73.33
EES03929	Sorghum	plastid	69.4	69.75
KRH72265	Soybean	plastid	79.1	69.74
TraesCS3D01G367700.1	Wheat	cytosol, plastid	68.91	69.25
TraesCS3B01G407400.2	Wheat	cytosol, plastid	68.91	69.25
Os01t0862300-01	Rice	plasma membrane	68.41	68.92
HORVU3Hr1G083780.10	Barley	cytosol	68.66	66.99
VIT_16s0039g01230.t01	Wine grape	cytosol, plastid	26.62	66.05
TraesCS3A01G375200.3	Wheat	cytosol, plastid	68.66	65.25
Zm00001d012286_P001	Maize	cytosol	67.66	65.23
Zm00001d042761_P001	Maize	mitochondrion	66.92	57.48
AT5G07120.1	Thale cress	cytosol	25.87	18.18
AT5G58440.1	Thale cress	cytosol	24.88	17.04

Protein Annotations

Gene3D:1.20.1270.60	MapMan:22.5.5.3.5	Gene3D:3.30.1520.10	EntrezGene:830501	UniProt:A0A178UD05	ProteinID:AED90975.1
InterPro:AH/BAR_dom_sf	ArrayExpress:AT5G06140	EnsemblPlantsGene:AT5G06140	RefSeq:AT5G06140	TAIR:AT5G06140	RefSeq:AT5G06140-TAIR-G
EnsemblPlants:AT5G06140.1	TAIR:AT5G06140.1	EMBL:AY080809	Unigene:At.27700	ProteinID:BAB10207.1	EMBL:BT029777
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005771	GO:GO:0005794	GO:GO:0005829
GO:GO:0006623	GO:GO:0006810	GO:GO:0006896	GO:GO:0006897	GO:GO:0007275	GO:GO:0008150
GO:GO:0008289	GO:GO:0008333	GO:GO:0009605	GO:GO:0009606	GO:GO:0009628	GO:GO:0009958
GO:GO:0009987	GO:GO:0010008	GO:GO:0010252	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043
GO:GO:0016050	GO:GO:0019898	GO:GO:0030904	GO:GO:0031902	GO:GO:0035091	GO:GO:0043231
GO:GO:0048364	InterPro:IPR001683	InterPro:IPR027267	InterPro:IPR036871	RefSeq:NP_196232.1	ProteinID:OAO91002.1
PFAM:PF00787	PFAM:PF09325	PO:PO:0000005	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230
PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001170	PO:PO:0001185
PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PFscan:PS50195	PANTHER:PTHR10555
PANTHER:PTHR10555:SF170	InterPro:PX_dom_sf	InterPro:Phox	UniProt:Q9FG38	SMART:SM00312	Symbol:SNX1
SUPFAM:SSF103657	SUPFAM:SSF64268	UniParc:UPI00000A4252	InterPro:Vps5_C	SEG:seg	:

Description

SNX1Sorting nexin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG38]

Coordinates

chr5:-:1855995..1858903

Molecular Weight (calculated)

46525.7 Da

IEP (calculated)

7.275

GRAVY (calculated)

-0.585

Length

402 amino acids

Sequence
(BLAST)

001: MESTEQPRNI SGSMQSPRSP SSHPYLSVSV TDPVKLGNGV QAYISYRVIT KTNLPEYQGP EKIVIRRYSD FVWLRDRLFE KYKGIFIPPL PEKSAVEKFR
101: FSAEFIEMRR AALDIFVNRI ALHPELQQSE DLRTFLQADE ETMDRFRFQE TSIFKKPADL MQMFRDVQSK VSDAVLGKEK PVEETTADYE KLKHYIFELE
201: NHLTEAQKHA YRLVKRHREL GQSLLDFGKA VKLLGACEGE PTGKAFSDLG TKSELLSIKL QKEAQQVLMN FEEPLKDYVR YVQSIKATIA ERGTAFKQHC
301: ELSETTKLKE INLDKLMLTR SDKVGEAEIE YREIKAESEE ATRRFERIVK RMEDEIVRFQ EQKTEEMGVA FHQFAKGQAR LANSVADAWR SLLPKLEASY
401: SV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.