Factsheet for GSMUA_Achr3P10000_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr3P10000_001
GSMUA_Achr8P21250_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07120.1	GSMUA_Achr10P...	AT5G06140.1	21156856
AT5G07120.1	GSMUA_Achr10P...	AT5G07120.1	21156856
AT5G07120.1	GSMUA_Achr11P...	AT5G07120.1	21156856
AT5G07120.1	GSMUA_Achr3P10000_001	AT5G07120.1	21156856
AT5G07120.1	GSMUA_Achr8P21250_001	AT5G07120.1	21156856
AT5G07120.1	GSMUA_Achr10P...	AT5G58440.1	21156856
AT5G07120.1	GSMUA_Achr11P...	AT5G58440.1	21156856
AT5G07120.1	GSMUA_Achr3P10000_001	AT5G58440.1	21156856
AT5G07120.1	GSMUA_Achr8P21250_001	AT5G58440.1	21156856
AT5G58440.1	GSMUA_Achr10P...	AT5G06140.1	21156856
AT5G58440.1	GSMUA_Achr10P...	AT5G07120.1	21156856
AT5G58440.1	GSMUA_Achr11P...	AT5G07120.1	21156856
AT5G58440.1	GSMUA_Achr3P10000_001	AT5G07120.1	21156856
AT5G58440.1	GSMUA_Achr8P21250_001	AT5G07120.1	21156856
AT5G58440.1	GSMUA_Achr10P...	AT5G58440.1	21156856
AT5G58440.1	GSMUA_Achr11P...	AT5G58440.1	21156856
AT5G58440.1	GSMUA_Achr3P10000_001	AT5G58440.1	21156856
AT5G58440.1	GSMUA_Achr8P21250_001	AT5G58440.1	21156856

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P21250_001	Banana	cytosol	73.2	72.39
GSMUA_Achr10P...	Banana	cytosol	64.51	68.7
Solyc09g031590.2.1	Tomato	cytosol	3.88	61.76
VIT_06s0004g07430.t01	Wine grape	cytosol	61.55	59.89
TraesCS1B01G235000.1	Wheat	cytosol, plastid	58.6	59.81
VIT_13s0067g01990.t01	Wine grape	cytosol	61.74	59.64
TraesCS1D01G223500.1	Wheat	cytosol, plastid	58.23	59.43
PGSC0003DMT400061516	Potato	cytosol	58.96	58.96
Os05t0346100-01	Rice	plasma membrane	58.78	58.89
Solyc06g050550.2.1	Tomato	plastid	58.78	58.78
KRH14903	Soybean	cytosol	56.01	58.27
CDX81034	Canola	cytosol	53.42	58.15
KRH73242	Soybean	cytosol	56.01	57.82
TraesCS1A01G221800.1	Wheat	cytosol, plastid	56.38	57.55
CDX70009	Canola	cytosol	56.19	56.82
KRH17110	Soybean	cytosol	58.78	56.68
Bra002651.1-P	Field mustard	cytosol	58.23	56.65
Bra005925.1-P	Field mustard	cytosol	53.6	56.42
Bra009291.1-P	Field mustard	cytosol	55.82	56.24
CDY57386	Canola	cytosol	58.04	56.17
CDY58875	Canola	cytosol	53.23	56.03
CDX99005	Canola	cytosol	55.82	56.03
KRH72755	Soybean	cytosol, endoplasmic reticulum	57.49	55.73
Zm00001d038007_P001	Maize	extracellular	56.93	55.7
GSMUA_Achr11P...	Banana	nucleus	53.97	55.51
Solyc09g031600.2.1	Tomato	cytosol	48.43	55.39
EES18029	Sorghum	cytosol	55.82	54.91
HORVU1Hr1G060480.2	Barley	plastid	59.33	54.68
AT5G07120.1	Thale cress	cytosol	57.49	54.37
AT5G58440.1	Thale cress	cytosol	58.23	53.66
CDY32985	Canola	cytosol	50.46	52.8
GSMUA_Achr10P...	Banana	cytosol, plastid	17.38	23.21

Protein Annotations

Gene3D:1.20.1270.60	MapMan:22.5.5.3.6	Gene3D:3.30.1520.10	InterPro:AH/BAR_dom_sf	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0008289	GO:GO:0035091	EnsemblPlantsGene:GSMUA_Achr3G10000_001	EnsemblPlants:GSMUA_Achr3P10000_001	EnsemblPlants:GSMUA_Achr3T10000_001
InterPro:IPR001683	InterPro:IPR027267	InterPro:IPR036871	UniProt:M0SDB7	PFAM:PF00787	PFAM:PF09325
PFscan:PS50195	PANTHER:PTHR10555	PANTHER:PTHR10555:SF201	InterPro:PX_dom_sf	InterPro:Phox	SMART:SM00312
SUPFAM:SSF64268	UniParc:UPI0002951A59	InterPro:Vps5_C	SEG:seg	:	:

Description

phox domain-containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G10000_001]

Coordinates

chr3:+:7230950..7237710

Molecular Weight (calculated)

60506.8 Da

IEP (calculated)

7.687

GRAVY (calculated)

-0.461

Length

541 amino acids

Sequence
(BLAST)

001: MGLEAFLGFA SIRARKERES LARSDAAASD CRTAIPSSLP SDVDPLLFPT PRGGDSPPPS SSSVLEPPSY ADVVFGPFES SNGASDQGPF LRLDASPRSV
101: RAVASDYRRI AVSDPQTEVE ASNSLVPGGT TYVTYLITTL VRPGSDDAGP EFSVRRRFRD VVTLADRLSE AYRGFFIPPR PDKNLVDSQI MQKHEFVEHR
201: RLALEKYLRR LAEHPVIGKS DELRVFLQEK GKLPLPTTTD VASRMMDGAV RLPKQLFGEW AAAQVAPQDI VQPAKGGRDL LRIFKELKQA VVNDWSGVKP
301: SVVEDKEFLE RKEKMQDLEW QLTPASQQQA EALIRSQQDV GEIMGGLGLT FIKLIKFETE ESVYRSQRIR VADTKNVATA AVKASRLYQE LNAHTVKHLD
401: TLHEYLGLTV AARSAFSDRT STLLTVQTLM SDLTTLNTRV EKLEAASSKI FGGDRSRLRK VDELRETIRV TEDAKSCAIR EYERIKKNNR NELDRLDREK
501: HDDFLSMLKG FVINQVGYSE KIASVWATVA EETSRYARDN N

Best Arabidopsis Sequence Match ( AT5G07120.2 )
(BLAST)

001: MMGSENDEES HLHSSKEEME KLFLREDGDP LTKSNVNGDK SNSNYRSAMS TLFDSRHPSI VVTPADSDPL FAPPSYYSES RSPRSKPNGG DRVSSYLEPP
101: SYADVIFSPF DDISEINGSE DGHSQSSDSL SRSPSSLSSD YIKITVSNPQ KEQEATNSMI PGGSTYITYQ ITTRTNLSDY GGSEFSVRRR FRDIVTLADR
201: LAESYRGFCI PPRPDKSIVE SQVMQKQEFV EQRRVALEKY LRRLVAHPVI RNSDELKVFL QAQGKLPLAT STDVASRMLD GAVKLPKQLF GEGGGASSVE
301: VVQPGRGGRD FLRMFKELRQ SVSNDWGGSK PPVVEEDKEF LEKKEKMYDL EQQIINASQQ AESLVKAQQD MGETMGELGL AFIKLTKFEN EEAVFNSQRA
401: RANDMKNLAT SAVKASRFYR ELNSQTVKHL DTLHDYLGLM MAVQGAFADR SSALLTVQTL LSELSSLEAR AEKLEVASSK VFGGDKSRIK KIEELKETIK
501: VTEDSKNVAI REYEQIKENN WSEVERLDRE RRADFLNMMK GFVANQVGYA EKIANVWTKV AEETRQYDRE SS

Arabidopsis Description

SNX2BSorting nexin 2B [Source:UniProtKB/Swiss-Prot;Acc:B9DFS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.