Factsheet for Os06t0660200-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

plasma membrane: 18260611

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0862300-01
Os02t0741100-01
Os03t0642300-00
Os04t0459000-01
Os04t0642000-01
Os08t0564300-04
Os12t0614600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57090.1	Os02t0741100-01	AT1G59980.1	18047472
AT5G57090.1	Os03t0642300-00	AT2G34650.1	17889649
AT5G57090.1	Os12t0614600-01	AT2G34650.1	17889649
AT5G57090.1	Os08t0564300-04	AT2G36910.1	17237354
AT5G57090.1	Os04t0459000-01	AT3G28860.1	17237354
AT5G57090.1	Os04t0642000-01	AT3G28860.1	17237354
AT5G57090.1	Os01t0862300-01	AT5G06140.1	16936718

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88769	Sorghum	plasma membrane	90.95	91.53
Zm00001d046893_P001	Maize	golgi, plasma membrane, vacuole	90.79	89.94
TraesCS7B01G398100.1	Wheat	golgi, plasma membrane, vacuole	89.05	88.77
TraesCS7A01G492400.1	Wheat	golgi, plasma membrane, vacuole	89.05	88.77
TraesCS7D01G478800.1	Wheat	golgi, plasma membrane, vacuole	88.89	88.47
HORVU7Hr1G110470.7	Barley	golgi, plasma membrane, vacuole	88.57	88.01
GSMUA_Achr1P15720_001	Banana	plasma membrane	63.97	78.56
CDY11886	Canola	plasma membrane	66.03	67.21
KRH02749	Soybean	plasma membrane	67.78	67.03
KRH19119	Soybean	endoplasmic reticulum	68.1	66.82
PGSC0003DMT400048251	Potato	plasma membrane	66.35	66.24
CDY38263	Canola	plasma membrane	60.63	66.09
Solyc07g006900.1.1	Tomato	plasma membrane	66.03	65.93
VIT_11s0052g00440.t01	Wine grape	plasma membrane	65.87	65.87
CDY20694	Canola	plasma membrane	66.35	65.83
CDY69709	Canola	plasma membrane	63.17	65.68
Os11t0137000-01	Rice	golgi, plasma membrane	56.98	64.8
Bra006834.1-P	Field mustard	plasma membrane	65.87	64.64
AT5G57090.1	Thale cress	golgi, plasma membrane, vacuole	66.35	64.61
CDX88606	Canola	plasma membrane	65.87	64.54
Bra002763.1-P	Field mustard	plasma membrane	60.79	64.37
Bra035648.1-P	Field mustard	plasma membrane	66.67	63.54
CDY53978	Canola	plasma membrane	59.52	62.92
Os06t0232300-01	Rice	plasma membrane	57.62	61.32
Os12t0133800-01	Rice	peroxisome, plastid	29.84	61.24
Os02t0743400-01	Rice	plasma membrane	56.67	60.0
Os01t0643300-01	Rice	golgi, plasma membrane, vacuole	56.98	58.09
Os05t0576900-01	Rice	golgi, plasma membrane, vacuole	49.52	52.79
Os01t0919800-01	Rice	plasma membrane	27.46	47.66
Os08t0529000-01	Rice	plasma membrane	25.4	43.24
Os01t0802700-01	Rice	plasma membrane	27.46	40.61
Os01t0715600-00	Rice	peroxisome, plasma membrane, plastid	30.63	40.04
Os11t0122800-00	Rice	plasma membrane	16.03	34.12
Os09t0505400-00	Rice	mitochondrion, nucleus, peroxisome	17.62	26.81

Protein Annotations

MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	EntrezGene:4341736	EMBL:AK101191	InterPro:Auxin_eff_plant	ProteinID:BAD46411.1
ProteinID:BAF20182.1	ProteinID:BAS98970.1	ProteinID:FAA00680.1	GO:GO:0000323	GO:GO:0001666	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005783	GO:GO:0005886	GO:GO:0006810	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009605	GO:GO:0009606	GO:GO:0009628	GO:GO:0009719	GO:GO:0009723
GO:GO:0009733	GO:GO:0009734	GO:GO:0009749	GO:GO:0009921	GO:GO:0009925	GO:GO:0009926
GO:GO:0009958	GO:GO:0009987	GO:GO:0010252	GO:GO:0010315	GO:GO:0010329	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	InterPro:Mem_trans	EnsemblPlantsGene:Os06g0660200	EnsemblPlants:Os06t0660200-01	PFAM:PF03547
InterPro:PIN2	PANTHER:PTHR31752	PANTHER:PTHR31752:SF4	UniProt:Q651V6	TIGRFAMs:TIGR00946	TMHMM:TMhelix
UniParc:UPI000043A562	RefSeq:XP_015641653.1	SEG:seg	:	:	:

Description

PIN PROTEIN 2Auxin efflux transporter, Polar auxin transport, Control of canopy architecture (Os06t0660200-01)

Coordinates

chr6:+:27200808..27204611

Molecular Weight (calculated)

66619.1 Da

IEP (calculated)

10.029

GRAVY (calculated)

0.299

Length

630 amino acids

Sequence
(BLAST)

001: MITGRDIYDV LAAIVPLYVA MFLAYGSVRW WGIFTPDQCS GINRFVAVFA VPLLSFHFIS TNDPYSMNYR FLAADSLQKL VILAALAVWH NLLSRYRRNG
101: GAAASLDWTI TLFSLSTLPN TLVMGIPLLR AMYGDFSGSL MVQIVVLQSV IWYTLMLFLF EYRGAKALIS EQFPPDVGAS IASFRVDSDV VSLNGREALQ
201: ADAEVGRDGR VHVVIRRSAS ASTTGGGGGA ARSGVSRAYG ASNAMTPRAS NLTGVEIYSL QTSREPTPRA SSFNQADFYA MFSGSKMASQ MASPMAQHGG
301: AGGRAQGLDE QVTNKFASGK AADPPSYPAP NPGMMPAPRK KELGGSNSNS NKELHMFVWS SSASPVSEAN LRNAVNHAAS TDFASAPPPA AVPVGGATPK
401: GVSGSVTPAA KNGGGELEIE DGLKSPAAGL AAKFPVSGSP YVAPRKKGGG ADVPGLAEAA HPMPPTSVMT RLILIMVWRK LIRNPNTYSS LIGLVWSLVS
501: FRWNIQMPSI IKGSISILSD AGLGMAMFSL GLFMALQPKI ISCGKTVATF AMAVRFLTGP AVIAATSIAI GLRGVLLHVA IVQAALPQGI VPFVFAKEYN
601: CHPQILSTAV IFGMLIALPI TILYYVLLGI

Best Arabidopsis Sequence Match ( AT5G57090.1 )
(BLAST)

001: MITGKDMYDV LAAMVPLYVA MILAYGSVRW WGIFTPDQCS GINRFVAVFA VPLLSFHFIS SNDPYAMNYH FLAADSLQKV VILAALFLWQ AFSRRGSLEW
101: MITLFSLSTL PNTLVMGIPL LRAMYGDFSG NLMVQIVVLQ SIIWYTLMLF LFEFRGAKLL ISEQFPETAG SITSFRVDSD VISLNGREPL QTDAEIGDDG
201: KLHVVVRRSS AASSMISSFN KSHGGGLNSS MITPRASNLT GVEIYSVQSS REPTPRASSF NQTDFYAMFN ASKAPSPRHG YTNSYGGAGA GPGGDVYSLQ
301: SSKGVTPRTS NFDEEVMKTA KKAGRGGRSM SGELYNNNSV PSYPPPNPMF TGSTSGASGV KKKESGGGGS GGGVGVGGQN KEMNMFVWSS SASPVSEANA
401: KNAMTRGSST DVSTDPKVSI PPHDNLATKA MQNLIENMSP GRKGHVEMDQ DGNNGGKSPY MGKKGSDVED GGPGPRKQQM PPASVMTRLI LIMVWRKLIR
501: NPNTYSSLFG LAWSLVSFKW NIKMPTIMSG SISILSDAGL GMAMFSLGLF MALQPKIIAC GKSVAGFAMA VRFLTGPAVI AATSIAIGIR GDLLHIAIVQ
601: AALPQGIVPF VFAKEYNVHP DILSTAVIFG MLVALPVTVL YYVLLGL

Arabidopsis Description

PIN2Auxin efflux carrier component 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU77]
SUBAcon: [plasma membrane,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.