Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006834.1-P | Field mustard | plasma membrane | 91.65 | 92.37 |
| Bra035648.1-P | Field mustard | plasma membrane | 93.66 | 91.68 |
| CDY20694 | Canola | plasma membrane | 89.49 | 91.18 |
| CDY11886 | Canola | plasma membrane | 86.4 | 90.31 |
| CDY69709 | Canola | plasma membrane | 84.23 | 89.93 |
| CDX88606 | Canola | plasma membrane | 87.64 | 88.18 |
| KRH02749 | Soybean | plasma membrane | 78.05 | 79.28 |
| KRH19119 | Soybean | endoplasmic reticulum | 78.21 | 78.82 |
| CDY53978 | Canola | plasma membrane | 72.49 | 78.69 |
| CDY38263 | Canola | plasma membrane | 69.71 | 78.03 |
| Bra002763.1-P | Field mustard | plasma membrane | 71.72 | 77.98 |
| VIT_11s0052g00440.t01 | Wine grape | plasma membrane | 74.65 | 76.67 |
| GSMUA_Achr1P15720_001 | Banana | plasma membrane | 59.66 | 75.24 |
| PGSC0003DMT400048251 | Potato | plasma membrane | 73.26 | 75.12 |
| Solyc07g006900.1.1 | Tomato | plasma membrane | 73.11 | 74.96 |
| EER88769 | Sorghum | plasma membrane | 64.92 | 67.09 |
| TraesCS7A01G492400.1 | Wheat | golgi, plasma membrane, vacuole | 65.22 | 66.77 |
| TraesCS7B01G398100.1 | Wheat | golgi, plasma membrane, vacuole | 65.22 | 66.77 |
| HORVU7Hr1G110470.7 | Barley | golgi, plasma membrane, vacuole | 65.38 | 66.72 |
| TraesCS7D01G478800.1 | Wheat | golgi, plasma membrane, vacuole | 65.22 | 66.67 |
| Os06t0660200-01 | Rice | plasma membrane | 64.61 | 66.35 |
| Zm00001d046893_P001 | Maize | golgi, plasma membrane, vacuole | 64.61 | 65.72 |
| AT1G73590.1 | Thale cress | plasma membrane | 58.89 | 61.25 |
| AT2G01420.2 | Thale cress | plasma membrane | 57.19 | 60.06 |
| AT1G70940.1 | Thale cress | plasma membrane | 58.73 | 59.38 |
| AT1G23080.1 | Thale cress | plasma membrane | 56.57 | 59.13 |
| AT1G77110.1 | Thale cress | plasma membrane | 43.89 | 49.82 |
| AT5G16530.1 | Thale cress | plasma membrane | 26.43 | 48.72 |
| AT5G15100.1 | Thale cress | plasma membrane | 27.51 | 48.5 |
Protein Annotations
| MapMan:11.2.4.1.1 | MapMan:24.2.5.2.1 | EntrezGene:835813 | UniProt:A0A178UL78 | ProteinID:AAC84042.1 | ProteinID:AAD16060.1 |
| ProteinID:AED96845.1 | EMBL:AF056026 | EMBL:AF086906 | EMBL:AF093241 | EMBL:AK176358 | ArrayExpress:AT5G57090 |
| EnsemblPlantsGene:AT5G57090 | RefSeq:AT5G57090 | TAIR:AT5G57090 | RefSeq:AT5G57090-TAIR-G | EnsemblPlants:AT5G57090.1 | TAIR:AT5G57090.1 |
| EMBL:AY078965 | InterPro:Auxin_eff_plant | ProteinID:BAA97359.1 | EMBL:BT001152 | Symbol:EIR1 | GO:GO:0000323 |
| GO:GO:0001666 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005783 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006950 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009606 | GO:GO:0009628 |
| GO:GO:0009719 | GO:GO:0009723 | GO:GO:0009733 | GO:GO:0009734 | GO:GO:0009749 | GO:GO:0009921 |
| GO:GO:0009925 | GO:GO:0009926 | GO:GO:0009958 | GO:GO:0009987 | GO:GO:0010252 | GO:GO:0010315 |
| GO:GO:0010329 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | InterPro:Mem_trans | RefSeq:NP_568848.1 |
| ProteinID:OAO93441.1 | PFAM:PF03547 | InterPro:PIN2 | PO:PO:0000025 | PO:PO:0000256 | PO:PO:0006081 |
| PO:PO:0009005 | PANTHER:PTHR31752 | PANTHER:PTHR31752:SF4 | UniProt:Q67YW0 | UniProt:Q9LU77 | TIGRFAMs:TIGR00946 |
| TMHMM:TMhelix | UniParc:UPI0000034BCE | SEG:seg | : | : | : |
Description
PIN2Auxin efflux carrier component 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU77]
Coordinates
chr5:+:23100516..23105228
Molecular Weight (calculated)
69335.1 Da
IEP (calculated)
9.748
GRAVY (calculated)
0.103
Length
647 amino acids
Sequence
(BLAST)
(BLAST)
001: MITGKDMYDV LAAMVPLYVA MILAYGSVRW WGIFTPDQCS GINRFVAVFA VPLLSFHFIS SNDPYAMNYH FLAADSLQKV VILAALFLWQ AFSRRGSLEW
101: MITLFSLSTL PNTLVMGIPL LRAMYGDFSG NLMVQIVVLQ SIIWYTLMLF LFEFRGAKLL ISEQFPETAG SITSFRVDSD VISLNGREPL QTDAEIGDDG
201: KLHVVVRRSS AASSMISSFN KSHGGGLNSS MITPRASNLT GVEIYSVQSS REPTPRASSF NQTDFYAMFN ASKAPSPRHG YTNSYGGAGA GPGGDVYSLQ
301: SSKGVTPRTS NFDEEVMKTA KKAGRGGRSM SGELYNNNSV PSYPPPNPMF TGSTSGASGV KKKESGGGGS GGGVGVGGQN KEMNMFVWSS SASPVSEANA
401: KNAMTRGSST DVSTDPKVSI PPHDNLATKA MQNLIENMSP GRKGHVEMDQ DGNNGGKSPY MGKKGSDVED GGPGPRKQQM PPASVMTRLI LIMVWRKLIR
501: NPNTYSSLFG LAWSLVSFKW NIKMPTIMSG SISILSDAGL GMAMFSLGLF MALQPKIIAC GKSVAGFAMA VRFLTGPAVI AATSIAIGIR GDLLHIAIVQ
601: AALPQGIVPF VFAKEYNVHP DILSTAVIFG MLVALPVTVL YYVLLGL
101: MITLFSLSTL PNTLVMGIPL LRAMYGDFSG NLMVQIVVLQ SIIWYTLMLF LFEFRGAKLL ISEQFPETAG SITSFRVDSD VISLNGREPL QTDAEIGDDG
201: KLHVVVRRSS AASSMISSFN KSHGGGLNSS MITPRASNLT GVEIYSVQSS REPTPRASSF NQTDFYAMFN ASKAPSPRHG YTNSYGGAGA GPGGDVYSLQ
301: SSKGVTPRTS NFDEEVMKTA KKAGRGGRSM SGELYNNNSV PSYPPPNPMF TGSTSGASGV KKKESGGGGS GGGVGVGGQN KEMNMFVWSS SASPVSEANA
401: KNAMTRGSST DVSTDPKVSI PPHDNLATKA MQNLIENMSP GRKGHVEMDQ DGNNGGKSPY MGKKGSDVED GGPGPRKQQM PPASVMTRLI LIMVWRKLIR
501: NPNTYSSLFG LAWSLVSFKW NIKMPTIMSG SISILSDAGL GMAMFSLGLF MALQPKIIAC GKSVAGFAMA VRFLTGPAVI AATSIAIGIR GDLLHIAIVQ
601: AALPQGIVPF VFAKEYNVHP DILSTAVIFG MLVALPVTVL YYVLLGL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.