CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70737
CDX79704
CDX84294
CDX84994
CDX84995
CDX86408
CDX87453
CDX98906
CDY00109
CDY03849
CDY17273
CDY20012
CDY24397
CDY24398
CDY24399
CDY30918
CDY31621
CDY35849
CDY36104
CDY42101
CDY43662
CDY45159
CDY46744
CDY51132
CDY60440
CDY65012
CDY70440

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57090.1	CDX70737	AT1G25490.1	17889649
AT5G57090.1	CDX84994	AT1G25490.1	17889649
AT5G57090.1	CDX84995	AT1G25490.1	17889649
AT5G57090.1	CDX87453	AT1G25490.1	17889649
AT5G57090.1	CDY03849	AT1G25490.1	17889649
AT5G57090.1	CDY24397	AT1G25490.1	17889649
AT5G57090.1	CDY24398	AT1G25490.1	17889649
AT5G57090.1	CDY24399	AT1G25490.1	17889649
AT5G57090.1	CDY31621	AT1G25490.1	17889649
AT5G57090.1	CDY35849	AT1G25490.1	17889649
AT5G57090.1	CDY36104	AT1G25490.1	17889649
AT5G57090.1	CDY42101	AT1G25490.1	17889649
AT5G57090.1	CDY51132	AT1G25490.1	17889649
AT5G57090.1	CDY70440	AT1G25490.1	17889649
AT5G57090.1	CDY30918	AT1G59980.1	18047472
AT5G57090.1	CDY45159	AT1G59980.1	18047472
AT5G57090.1	CDX84294	AT2G34650.1	17889649
AT5G57090.1	CDY17273	AT2G34650.1	17889649
AT5G57090.1	CDY43662	AT2G34650.1	17889649
AT5G57090.1	CDX79704	AT2G36910.1	17237354
AT5G57090.1	CDY46744	AT2G36910.1	17237354
AT5G57090.1	CDX86408	AT3G28860.1	17237354
AT5G57090.1	CDY00109	AT3G28860.1	17237354
AT5G57090.1	CDY20012	AT3G28860.1	17237354
AT5G57090.1	CDY65012	AT3G28860.1	17237354
AT5G57090.1	CDX98906	AT5G06140.1	16936718
AT5G57090.1	CDY60440	AT5G06140.1	16936718

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88606	Canola	plasma membrane	96.77	93.16
Bra006834.1-P	Field mustard	plasma membrane	95.8	92.37
CDY69709	Canola	plasma membrane	88.69	90.59
CDY20694	Canola	plasma membrane	92.89	90.55
AT5G57090.1	Thale cress	golgi, plasma membrane, vacuole	90.31	86.4
CDY38263	Canola	plasma membrane	71.73	76.82
KRH02749	Soybean	plasma membrane	77.54	75.35
CDY53978	Canola	plasma membrane	72.05	74.83
KRH19119	Soybean	endoplasmic reticulum	77.54	74.77
GSMUA_Achr1P15720_001	Banana	plasma membrane	60.9	73.49
VIT_11s0052g00440.t01	Wine grape	plasma membrane	73.34	72.06
Solyc07g006900.1.1	Tomato	plasma membrane	71.89	70.52
PGSC0003DMT400048251	Potato	plasma membrane	71.57	70.21
CDX82059	Canola	golgi, plasma membrane	57.03	67.11
EER88769	Sorghum	plasma membrane	67.37	66.61
Os06t0660200-01	Rice	plasma membrane	67.21	66.03
TraesCS7A01G492400.1	Wheat	golgi, plasma membrane, vacuole	67.37	65.98
TraesCS7B01G398100.1	Wheat	golgi, plasma membrane, vacuole	67.37	65.98
TraesCS7D01G478800.1	Wheat	golgi, plasma membrane, vacuole	67.37	65.88
CDX96484	Canola	plasma membrane	56.87	65.79
HORVU7Hr1G110470.7	Barley	golgi, plasma membrane, vacuole	67.37	65.77
Zm00001d046893_P001	Maize	golgi, plasma membrane, vacuole	66.88	65.09
CDY47745	Canola	golgi, plasma membrane	58.97	63.59
CDY40380	Canola	plasma membrane	57.03	62.81
CDY23471	Canola	golgi, plasma membrane	49.76	62.47
CDY63826	Canola	plasma membrane	56.7	62.34
CDY25767	Canola	plasma membrane	57.51	62.13
CDY12491	Canola	plasma membrane	57.51	62.02
CDX68327	Canola	plasma membrane	48.47	61.86
CDY68262	Canola	plasma membrane	57.84	61.3
CDX96288	Canola	golgi, plasma membrane	57.67	61.23
CDX91695	Canola	plasma membrane	53.96	58.49
CDY41467	Canola	plasma membrane	53.96	57.19
CDY72296	Canola	golgi, plasma membrane	41.84	57.17
CDY09501	Canola	plasma membrane	49.27	54.08
CDY67254	Canola	golgi, plasma membrane, vacuole	28.11	50.0
CDX69445	Canola	golgi, plasma membrane, vacuole	28.11	50.0
CDX88341	Canola	plasma membrane	45.4	49.56
CDX87543	Canola	plasma membrane	45.07	49.21
CDX70699	Canola	golgi, plasma membrane, vacuole	27.46	48.85
CDY63766	Canola	golgi, plasma membrane	22.29	46.46
CDX69551	Canola	endoplasmic reticulum, extracellular, vacuole	16.8	46.43
CDX85565	Canola	plasma membrane	26.98	46.13
CDX78697	Canola	plasma membrane	27.63	43.4
CDY66594	Canola	plasma membrane	28.92	39.87
CDX85566	Canola	cytosol	2.58	5.8

Protein Annotations

MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	GO:A0A078FF24	UniProt:A0A078FF24	InterPro:Auxin_eff_plant	EnsemblPlants:CDY11886
ProteinID:CDY11886	ProteinID:CDY11886.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987
GO:GO:0010315	GO:GO:0010329	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00060722001
InterPro:Mem_trans	PFAM:PF03547	InterPro:PIN2	PANTHER:PTHR31752	PANTHER:PTHR31752:SF4	TIGRFAMs:TIGR00946
TMHMM:TMhelix	UniParc:UPI0004EEFC30	SEG:seg	:	:	:

Description

BnaC03g13120DAuxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A078FF24]

Coordinates

chrLK032015:-:243966..249364

Molecular Weight (calculated)

66910.3 Da

IEP (calculated)

9.569

GRAVY (calculated)

0.143

Length

619 amino acids

Sequence
(BLAST)

001: MITGKDMYDV LAAMVPLYVA MMLAYGSVRW WGIFTPDQCS GINRFVAVFA VPLLSFHFIS SNDPYAMDYQ FLAADSLQKV VILSALFLWQ ARIINLTASG
101: CRRGSLEWMI TLFSLSTLPN TLVMGIPLLR AMYGDFSGNL MVQIVVLQSI IWYTLMLFLF EFRGAKLLIS EQFPETAGSI TSFRVDSDVL SLNGREPLET
201: DAEIGDDGKL HVVVRRSSAA SSMISSFNKS HGGGFNSSMI TPRASNLTGV EIYSVQSSRE PTPRASSFNQ TDFYAMFNAS KAPSPHVYSL QSSKGVTPRT
301: SNFDEEALKN AKKGGRGAKI PSYPPPNPMF KGSTSGASSG GGGEQNKEMN MFVWSSSASP VSEAHARNAI TRGASTDSST DPKAYLPPHE NLASKAMHNL
401: IENMTPGRKA HVEMDQEGNN EGKSGVNSSP YNGKKGSDVE DGGPGGPRKP QMPPASVMTR LILIMVWRKL IRNPNTYSSL FGLAWSLISF KWNIKMPTIM
501: SGSISILSDA GLGMAMFSLG LFMALQPKII ACGKSVAVFA MAVRFLTGPA VIAATSIAIG LRGSLLHVAI VQAALPQGIV PFVFAKEYNV HPDILSTAVI
601: FGMLVALPVT VLYYVLLGI

Best Arabidopsis Sequence Match ( AT5G57090.1 )
(BLAST)

001: MITGKDMYDV LAAMVPLYVA MILAYGSVRW WGIFTPDQCS GINRFVAVFA VPLLSFHFIS SNDPYAMNYH FLAADSLQKV VILAALFLWQ AFSRRGSLEW
101: MITLFSLSTL PNTLVMGIPL LRAMYGDFSG NLMVQIVVLQ SIIWYTLMLF LFEFRGAKLL ISEQFPETAG SITSFRVDSD VISLNGREPL QTDAEIGDDG
201: KLHVVVRRSS AASSMISSFN KSHGGGLNSS MITPRASNLT GVEIYSVQSS REPTPRASSF NQTDFYAMFN ASKAPSPRHG YTNSYGGAGA GPGGDVYSLQ
301: SSKGVTPRTS NFDEEVMKTA KKAGRGGRSM SGELYNNNSV PSYPPPNPMF TGSTSGASGV KKKESGGGGS GGGVGVGGQN KEMNMFVWSS SASPVSEANA
401: KNAMTRGSST DVSTDPKVSI PPHDNLATKA MQNLIENMSP GRKGHVEMDQ DGNNGGKSPY MGKKGSDVED GGPGPRKQQM PPASVMTRLI LIMVWRKLIR
501: NPNTYSSLFG LAWSLVSFKW NIKMPTIMSG SISILSDAGL GMAMFSLGLF MALQPKIIAC GKSVAGFAMA VRFLTGPAVI AATSIAIGIR GDLLHIAIVQ
601: AALPQGIVPF VFAKEYNVHP DILSTAVIFG MLVALPVTVL YYVLLGL

Arabidopsis Description

PIN2Auxin efflux carrier component 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU77]
SUBAcon: [plasma membrane,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.