CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

nucleus 1
plastid 1
golgi 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	golgi
PProwler:	secretory
TargetP:	secretory
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70737
CDX79704
CDX84294
CDX84994
CDX84995
CDX86408
CDX87453
CDY00109
CDY03849
CDY17273
CDY20012
CDY24397
CDY24398
CDY24399
CDY31621
CDY35849
CDY36104
CDY42101
CDY43662
CDY46744
CDY51132
CDY65012
CDY70440

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73590.1	CDX70737	AT1G25490.1	17889649
AT1G73590.1	CDX84994	AT1G25490.1	17889649
AT1G73590.1	CDX84995	AT1G25490.1	17889649
AT1G73590.1	CDX87453	AT1G25490.1	17889649
AT1G73590.1	CDY03849	AT1G25490.1	17889649
AT1G73590.1	CDY24397	AT1G25490.1	17889649
AT1G73590.1	CDY24398	AT1G25490.1	17889649
AT1G73590.1	CDY24399	AT1G25490.1	17889649
AT1G73590.1	CDY31621	AT1G25490.1	17889649
AT1G73590.1	CDY35849	AT1G25490.1	17889649
AT1G73590.1	CDY36104	AT1G25490.1	17889649
AT1G73590.1	CDY42101	AT1G25490.1	17889649
AT1G73590.1	CDY51132	AT1G25490.1	17889649
AT1G73590.1	CDY70440	AT1G25490.1	17889649
AT1G73590.1	CDX84294	AT2G34650.1	17889649
AT1G73590.1	CDY17273	AT2G34650.1	17889649
AT1G73590.1	CDY43662	AT2G34650.1	17889649
AT1G73590.1	CDX79704	AT2G36910.1	17237354
AT1G73590.1	CDY46744	AT2G36910.1	17237354
AT1G73590.1	CDX86408	AT3G28860.1	17237354
AT1G73590.1	CDY00109	AT3G28860.1	17237354
AT1G73590.1	CDY20012	AT3G28860.1	17237354
AT1G73590.1	CDY65012	AT3G28860.1	17237354

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96484	Canola	plasma membrane	83.22	70.47
Bra015983.1-P	Field mustard	plasma membrane	95.36	69.9
CDX82059	Canola	golgi, plasma membrane	79.03	68.06
CDY47745	Canola	golgi, plasma membrane	84.11	66.38
AT1G73590.1	Thale cress	plasma membrane	89.85	65.43
KRH39071	Soybean	plasma membrane	56.51	60.95
VIT_17s0000g02420.t01	Wine grape	plasma membrane	71.08	54.21
KRH48642	Soybean	plasma membrane	72.19	54.05
KRH41847	Soybean	golgi, plasma membrane	70.86	53.23
Solyc03g118740.2.1	Tomato	golgi, plasma membrane	70.42	52.21
PGSC0003DMT400014752	Potato	golgi, plasma membrane	70.2	51.79
CDX96288	Canola	golgi, plasma membrane	56.51	43.91
CDY68262	Canola	plasma membrane	56.51	43.84
CDY12491	Canola	plasma membrane	55.41	43.73
CDY25767	Canola	plasma membrane	55.19	43.63
CDY63826	Canola	plasma membrane	52.98	42.63
CDY40380	Canola	plasma membrane	52.76	42.53
CDY11886	Canola	plasma membrane	57.17	41.84
CDY38263	Canola	plasma membrane	52.76	41.35
CDX91695	Canola	plasma membrane	51.43	40.81
CDY23471	Canola	golgi, plasma membrane	44.37	40.77
CDY69709	Canola	plasma membrane	54.53	40.76
CDY09501	Canola	plasma membrane	50.55	40.6
CDY20694	Canola	plasma membrane	56.29	40.16
CDX68327	Canola	plasma membrane	42.83	40.0
CDX88606	Canola	plasma membrane	56.51	39.81
CDY41467	Canola	plasma membrane	51.21	39.73
CDY53978	Canola	plasma membrane	51.43	39.09
CDX69551	Canola	endoplasmic reticulum, extracellular, vacuole	16.56	33.48
CDX88341	Canola	plasma membrane	41.72	33.33
CDX87543	Canola	plasma membrane	41.72	33.33
CDY63766	Canola	golgi, plasma membrane	18.1	27.61
CDX70699	Canola	golgi, plasma membrane, vacuole	20.09	26.15
CDY67254	Canola	golgi, plasma membrane, vacuole	19.21	25.0
CDX69445	Canola	golgi, plasma membrane, vacuole	19.21	25.0
CDX85565	Canola	plasma membrane	19.65	24.59
CDX78697	Canola	plasma membrane	20.31	23.35
CDY66594	Canola	plasma membrane	20.75	20.94
CDX85566	Canola	cytosol	0.44	0.72

Protein Annotations

MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	GO:A0A078K3F9	UniProt:A0A078K3F9	InterPro:Auxin_eff_plant	EnsemblPlants:CDY72296
ProteinID:CDY72296	ProteinID:CDY72296.1	GO:GO:0005575	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00027417001	InterPro:Mem_trans	PFAM:PF03547	PANTHER:PTHR31752	PANTHER:PTHR31752:SF14
TIGRFAMs:TIGR00946	TMHMM:TMhelix	UniParc:UPI0004EE95CE	SEG:seg	:	:

Description

BnaCnng76990DAuxin efflux carrier component (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078K3F9]

Coordinates

chrLK049980:+:3..1920

Molecular Weight (calculated)

49507.3 Da

IEP (calculated)

7.766

GRAVY (calculated)

-0.071

Length

453 amino acids

Sequence
(BLAST)

001: LFAVPLLSFH FIAANNPYAM NLRFLAADSL QKIIVLCLLF LWCKISRTGS LDWTITLFSL STLPNTLVMG IPLLKGMYGE FSGELMVQIV VLQCVIWYTL
101: MLFLFEYRGA KLLISEQFPD TAGSIVSIHV DSDIMSLDGR QPLETEAEIK EDGKLHVTVR RSNASRSDIY SRRSQGLSAT PRPSNLTNAE IYSLQSSRNP
201: TPRGSSFNHT DFYSMMGAAG GGVGTRTLGP TPRPSNYEED GGAKPPAGGG AGRFHHQSGG SGAHYPAPNP GIGSGQDGNG RDLHMFVWSS SASPVSDVFG
301: GGANHHADYA AANNDLHKDV KISVPQGNSN DNQHVDREEF SFGNKHDDSK VLATDGANNI NKSQQQAKVM PPTSVMTRLI LIMVWRKLIR NPNSYSSLFG
401: ITWSLISFKW NIEMPAIIAK SISILSDAGL GMAMFSLGQF LILPLYIYYF IIS

Best Arabidopsis Sequence Match ( AT1G73590.1 )
(BLAST)

001: MITAADFYHV MTAMVPLYVA MILAYGSVKW WKIFTPDQCS GINRFVALFA VPLLSFHFIA ANNPYAMNLR FLAADSLQKV IVLSLLFLWC KLSRNGSLDW
101: TITLFSLSTL PNTLVMGIPL LKGMYGNFSG DLMVQIVVLQ CIIWYTLMLF LFEYRGAKLL ISEQFPDTAG SIVSIHVDSD IMSLDGRQPL ETEAEIKEDG
201: KLHVTVRRSN ASRSDIYSRR SQGLSATPRP SNLTNAEIYS LQSSRNPTPR GSSFNHTDFY SMMASGGGRN SNFGPGEAVF GSKGPTPRPS NYEEDGGPAK
301: PTAAGTAAGA GRFHYQSGGS GGGGGAHYPA PNPGMFSPNT GGGGGTAAKG NAPVVGGKRQ DGNGRDLHMF VWSSSASPVS DVFGGGGGNH HADYSTATND
401: HQKDVKISVP QGNSNDNQYV EREEFSFGNK DDDSKVLATD GGNNISNKTT QAKVMPPTSV MTRLILIMVW RKLIRNPNSY SSLFGITWSL ISFKWNIEMP
501: ALIAKSISIL SDAGLGMAMF SLGLFMALNP RIIACGNRRA AFAAAMRFVV GPAVMLVASY AVGLRGVLLH VAIIQAALPQ GIVPFVFAKE YNVHPDILST
601: AVIFGMLIAL PITLLYYILL GL

Arabidopsis Description

PIN1Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178WFG7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.