CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70218
CDX82059
CDX84294
CDX88606
CDX96484
CDY11886
CDY17273
CDY20694
CDY28767
CDY38263
CDY42456
CDY43662
CDY44862
CDY47745
CDY48640
CDY53978
CDY61745
CDY69709
CDY72296

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G34650.1	CDX82059	AT1G73590.1	17889649
AT2G34650.1	CDX96484	AT1G73590.1	17889649
AT2G34650.1	CDY47745	AT1G73590.1	17889649
AT2G34650.1	CDY72296	AT1G73590.1	17889649
AT2G34650.1	CDX84294	AT2G34650.1	12857841
AT2G34650.1	CDY17273	AT2G34650.1	12857841
AT2G34650.1	CDY43662	AT2G34650.1	12857841
AT2G34650.1	CDX70218	AT5G04510.1	16601102
AT2G34650.1	CDY44862	AT5G04510.1	16601102
AT2G34650.1	CDY28767	AT5G54490.1	12857841
AT2G34650.1	CDY42456	AT5G54490.1	12857841
AT2G34650.1	CDY48640	AT5G54490.1	12857841
AT2G34650.1	CDY61745	AT5G54490.1	12857841
AT2G34650.1	CDX88606	AT5G57090.1	17889649
AT2G34650.1	CDY11886	AT5G57090.1	17889649
AT2G34650.1	CDY20694	AT5G57090.1	17889649
AT2G34650.1	CDY38263	AT5G57090.1	17889649
AT2G34650.1	CDY53978	AT5G57090.1	17889649
AT2G34650.1	CDY69709	AT5G57090.1	17889649

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005403.1-P	Field mustard	cytosol	98.41	98.41
CDY17273	Canola	cytosol	98.41	98.41
AT2G34650.1	Thale cress	cytosol	92.48	92.69
CDY43662	Canola	cytosol	92.48	92.48
KRH21098	Soybean	cytosol, plastid	67.88	65.93
KRH59216	Soybean	cytosol	68.34	65.22
VIT_10s0003g04320.t01	Wine grape	cytosol, plastid	66.97	65.19
GSMUA_Achr7P01120_001	Banana	nucleus	54.44	56.5
TraesCS5B01G377300.1	Wheat	plastid	51.48	52.68
TraesCS5D01G044800.1	Wheat	plasma membrane	54.44	50.0
TraesCS5A01G375200.1	Wheat	plastid	51.94	49.78
TraesCS5A01G037100.1	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	53.99	49.69
Os12t0614600-01	Rice	cytosol	54.44	49.38
TraesCS5B01G037900.1	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	53.53	49.16
Zm00001d033234_P001	Maize	plastid	52.62	49.04
HORVU5Hr1G009390.1	Barley	cytosol, nucleus, plasma membrane	53.76	48.86
Os03t0642300-00	Rice	plastid	51.03	48.59
EER93759	Sorghum	plastid	52.62	48.33
OQU79615	Sorghum	cytosol, plastid	54.67	47.52
Zm00001d031068_P001	Maize	plastid	52.85	47.25
GSMUA_Achr5P02480_001	Banana	nucleus	49.89	47.0
HORVU5Hr1G093040.2	Barley	plastid	51.71	43.07
CDY20744	Canola	cytosol, plastid	46.24	42.12
CDY11972	Canola	cytosol, plastid	46.92	41.87
CDY06552	Canola	cytosol, plastid	46.01	41.74
CDY48186	Canola	cytosol	46.24	41.6
CDY36769	Canola	cytosol, plastid	46.47	41.46
CDY17366	Canola	cytosol, plastid	46.7	41.0
CDY28629	Canola	cytosol, plastid	46.47	40.8
CDY08710	Canola	cytosol, plastid	40.55	40.36
CDX89320	Canola	cytosol	45.56	38.99
CDX94306	Canola	cytosol	45.56	38.99
CDX74407	Canola	cytosol, plastid	42.37	38.91
CDY33329	Canola	cytosol	41.46	37.37
CDY30287	Canola	cytosol, plastid	42.37	37.05
CDY17708	Canola	cytosol	46.24	36.64
CDY35093	Canola	cytosol	42.14	36.27
CDX98447	Canola	nucleus	38.72	35.87
CDX77795	Canola	cytosol	46.47	35.73
CDX83710	Canola	cytosol, plastid	44.65	35.7
CDX97569	Canola	nucleus	38.72	35.49
CDX74691	Canola	cytosol	44.65	35.19
CDY30659	Canola	nucleus	39.18	35.03
CDY67737	Canola	nucleus	39.18	34.96
CDY56474	Canola	cytosol	44.65	34.27
CDY08414	Canola	cytosol, plastid	43.96	33.8
CDY42166	Canola	cytosol, plastid	43.74	33.74
CDY13725	Canola	plastid	43.96	33.51
CDY50542	Canola	cytosol	43.05	33.04
CDY30488	Canola	cytosol	45.56	32.36
CDY23458	Canola	cytosol	45.1	30.65
CDY13336	Canola	cytosol, plastid	43.96	27.73
CDX75049	Canola	cytosol	41.0	24.9
CDX67542	Canola	cytosol	44.42	24.28
CDX77055	Canola	cytosol	46.7	23.86
CDX84133	Canola	cytosol	40.77	23.28
CDX70297	Canola	cytosol	44.87	22.46
CDX76251	Canola	cytosol	41.69	22.24
CDY10368	Canola	cytosol	44.87	21.79
CDX73596	Canola	cytosol	44.42	19.4
CDX78131	Canola	cytosol	44.42	19.31
CDY33330	Canola	cytosol, mitochondrion, nucleus	6.83	18.4

Protein Annotations

Gene3D:1.10.510.10	MapMan:11.2.4.1.2	MapMan:18.4.6.5	Gene3D:3.30.200.20	GO:A0A078D7D7	EnsemblPlants:CDX84294
ProteinID:CDX84294	ProteinID:CDX84294.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00141390001
InterPro:IPR000719	InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24351
PANTHER:PTHR24351:SF60	InterPro:Prot_kinase_dom	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0004EEB201
SEG:seg	:	:	:	:	:

Description

BnaC04g10560D

Coordinates

chrLK031836:+:1520439..1522056

Molecular Weight (calculated)

49340.1 Da

IEP (calculated)

9.850

GRAVY (calculated)

-0.313

Length

439 amino acids

Sequence
(BLAST)

001: MLRESDSEMS LGTTNSPISS GTESCSSFSR LSFDTPPSTT ATIPEEESFL SLKPHRSSDF AYAEIRRRRK HGLTFRDFRL MRRVGAGDIG TVYLCRLAGD
101: EEESRRSYFA MKVVDKEALA LKKKMHRAEM EKKILKMLDH PFLPTLYAEF EASHFSCIVM EYCSGGDLHS LRHRQPDGRF SLSSARFYAA EVLVALEYLH
201: MLGIIYRDLK PENILVRSDG HIMLSDFDLS LCSDSIAAVE SSSSSPENQP RSSPRRLTRL AKLFHRVLRS KKVQTLEPNR LFVAEPVSAR SGSFVGTHEY
301: VAPEVASGGS HGNAVDWWAF GVFLYEIIYG RTPFAAPTND VILRNIVKRQ LTFPTDTPAT MFELHARSLI SGLLNKDPTK RLGSRRGAAE VKVHPFFKGL
401: NFALIRTLTP PEIPSDVRRP KKAATFSGRS NKPAAFDFF

Best Arabidopsis Sequence Match ( AT2G34650.1 )
(BLAST)

001: MLRESDGEMS LGTTNSPISS GTESCSSFSR LSFDAPPSTI PEEESFLSLK PHRSSDFAYA EIRRRKKQGL TFRDFRLMRR IGAGDIGTVY LCRLAGDEEE
101: SRSSYFAMKV VDKEALALKK KMHRAEMEKT ILKMLDHPFL PTLYAEFEAS HFSCIVMEYC SGGDLHSLRH RQPHRRFSLS SARFYAAEVL VALEYLHMLG
201: IIYRDLKPEN ILVRSDGHIM LSDFDLSLCS DSIAAVESSS SSPENQQLRS PRRFTRLARL FQRVLRSKKV QTLEPTRLFV AEPVTARSGS FVGTHEYVAP
301: EVASGGSHGN AVDWWAFGVF LYEMIYGKTP FVAPTNDVIL RNIVKRQLSF PTDSPATMFE LHARNLISGL LNKDPTKRLG SRRGAAEVKV HPFFKGLNFA
401: LIRTLTPPEI PSSVVKKPMK SATFSGRSSN KPAAFDYF

Arabidopsis Description

PIDPID [Source:UniProtKB/TrEMBL;Acc:A0A178VTE5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.