Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plasma membrane 1
- mitochondrion 2
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G044800.1 | Wheat | plasma membrane | 97.49 | 97.49 |
| TraesCS5A01G037100.1 | Wheat | cytosol, mitochondrion, nucleus, plasma membrane | 94.98 | 95.18 |
| HORVU5Hr1G009390.1 | Barley | cytosol, nucleus, plasma membrane | 91.21 | 90.27 |
| Os12t0614600-01 | Rice | cytosol | 75.94 | 75.0 |
| Zm00001d031068_P001 | Maize | plastid | 73.85 | 71.89 |
| OQU79615 | Sorghum | cytosol, plastid | 73.22 | 69.31 |
| TraesCS5B01G377300.1 | Wheat | plastid | 62.13 | 69.23 |
| GSMUA_Achr7P01120_001 | Banana | nucleus | 57.95 | 65.48 |
| VIT_10s0003g04320.t01 | Wine grape | cytosol, plastid | 51.26 | 54.32 |
| GSMUA_Achr5P02480_001 | Banana | nucleus | 52.72 | 54.08 |
| CDX84294 | Canola | cytosol, plastid | 49.16 | 53.53 |
| Bra021925.1-P | Field mustard | cytosol | 48.74 | 53.08 |
| Bra005403.1-P | Field mustard | cytosol | 48.54 | 52.85 |
| CDY17273 | Canola | cytosol | 48.54 | 52.85 |
| CDY43662 | Canola | cytosol | 48.54 | 52.85 |
| AT2G34650.1 | Thale cress | cytosol | 48.33 | 52.74 |
| KRH59216 | Soybean | cytosol | 50.0 | 51.96 |
| KRH21098 | Soybean | cytosol, plastid | 47.91 | 50.66 |
| TraesCS3B01G147300.1 | Wheat | cytosol | 44.77 | 44.12 |
| TraesCS5B01G128400.1 | Wheat | plastid | 38.7 | 39.61 |
| TraesCS5B01G459300.1 | Wheat | cytosol | 40.17 | 37.07 |
| TraesCS6B01G281400.1 | Wheat | cytosol | 42.89 | 36.8 |
| TraesCS4B01G221800.1 | Wheat | nucleus | 38.91 | 35.98 |
| TraesCS5B01G166900.1 | Wheat | cytosol | 42.68 | 35.6 |
| TraesCS1B01G152700.1 | Wheat | cytosol | 40.38 | 34.84 |
| TraesCS5B01G252500.1 | Wheat | cytosol | 41.63 | 34.49 |
| TraesCS7B01G123400.1 | Wheat | cytosol | 40.59 | 33.56 |
| TraesCS3B01G183500.2 | Wheat | cytosol | 40.8 | 32.39 |
| TraesCS1B01G232000.1 | Wheat | plastid | 42.68 | 31.73 |
| TraesCS2B01G411000.1 | Wheat | cytosol | 42.47 | 29.34 |
| TraesCS2B01G309900.1 | Wheat | cytosol | 42.05 | 25.7 |
| TraesCS5B01G115200.1 | Wheat | cytosol | 40.59 | 24.71 |
Protein Annotations
| Gene3D:1.10.510.10 | MapMan:11.2.4.1.2 | MapMan:18.4.6.5 | Gene3D:3.30.200.20 | GO:GO:0000003 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004672 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006464 |
| GO:GO:0006468 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009791 | GO:GO:0009908 |
| GO:GO:0009987 | GO:GO:0016301 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0048364 | GO:GO:0048367 |
| InterPro:IPR000719 | InterPro:Kinase-like_dom_sf | PFAM:PF00069 | ScanProsite:PS00108 | PFscan:PS50011 | PANTHER:PTHR24351 |
| PANTHER:PTHR24351:SF60 | InterPro:Prot_kinase_dom | SMART:SM00220 | SUPFAM:SSF56112 | InterPro:Ser/Thr_kinase_AS | EnsemblPlantsGene:TraesCS5B01G037900 |
| EnsemblPlants:TraesCS5B01G037900.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:42531638..42533074
Molecular Weight (calculated)
51591.8 Da
IEP (calculated)
9.758
GRAVY (calculated)
-0.113
Length
478 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAAVRAPAP RKLPAEGTLL LAAEEALSDL ETASSTGAPN SSLSSASSAG SLARCSSLSR LSFDCTPSAA MAAAATACSP RPSAAFRPHR SGDVAWAAIR
101: ALSASSPATP LGPADFKLVR RVGGGDIGTV YLCRLRTAAS AEAPSCMYAM KVVDRRAVAK KHKLERAAAE KRILRLLDHP FLPTLFADFD AAPRFSCVVM
201: EFCPGGDLHS LRHRMPSRRF PVPSARFYAA EVLLALEYLH MMGIVYRDLK PENVLIRADG HIMLTDFDLS LQSTSSPSLE PAVAEEEQQE EPRSVSCFPI
301: RFRRRRHRRR CAASPPRFVA EPVSARSCSF VGTHEYVAPE VAGGGAHGAA VDWWAYGVFL YELLHSRTPF AGATNEDTLR NIVRAPLTFP SSCGTGCHAD
401: VAAARDLIAH LLTKDPAARL GSRHGAADVK AHPFFKNLNF ALLRSSRPPV VPSAPLHRSQ SCKTPASRKP DTKRFDLF
101: ALSASSPATP LGPADFKLVR RVGGGDIGTV YLCRLRTAAS AEAPSCMYAM KVVDRRAVAK KHKLERAAAE KRILRLLDHP FLPTLFADFD AAPRFSCVVM
201: EFCPGGDLHS LRHRMPSRRF PVPSARFYAA EVLLALEYLH MMGIVYRDLK PENVLIRADG HIMLTDFDLS LQSTSSPSLE PAVAEEEQQE EPRSVSCFPI
301: RFRRRRHRRR CAASPPRFVA EPVSARSCSF VGTHEYVAPE VAGGGAHGAA VDWWAYGVFL YELLHSRTPF AGATNEDTLR NIVRAPLTFP SSCGTGCHAD
401: VAAARDLIAH LLTKDPAARL GSRHGAADVK AHPFFKNLNF ALLRSSRPPV VPSAPLHRSQ SCKTPASRKP DTKRFDLF
001: MLRESDGEMS LGTTNSPISS GTESCSSFSR LSFDAPPSTI PEEESFLSLK PHRSSDFAYA EIRRRKKQGL TFRDFRLMRR IGAGDIGTVY LCRLAGDEEE
101: SRSSYFAMKV VDKEALALKK KMHRAEMEKT ILKMLDHPFL PTLYAEFEAS HFSCIVMEYC SGGDLHSLRH RQPHRRFSLS SARFYAAEVL VALEYLHMLG
201: IIYRDLKPEN ILVRSDGHIM LSDFDLSLCS DSIAAVESSS SSPENQQLRS PRRFTRLARL FQRVLRSKKV QTLEPTRLFV AEPVTARSGS FVGTHEYVAP
301: EVASGGSHGN AVDWWAFGVF LYEMIYGKTP FVAPTNDVIL RNIVKRQLSF PTDSPATMFE LHARNLISGL LNKDPTKRLG SRRGAAEVKV HPFFKGLNFA
401: LIRTLTPPEI PSSVVKKPMK SATFSGRSSN KPAAFDYF
101: SRSSYFAMKV VDKEALALKK KMHRAEMEKT ILKMLDHPFL PTLYAEFEAS HFSCIVMEYC SGGDLHSLRH RQPHRRFSLS SARFYAAEVL VALEYLHMLG
201: IIYRDLKPEN ILVRSDGHIM LSDFDLSLCS DSIAAVESSS SSPENQQLRS PRRFTRLARL FQRVLRSKKV QTLEPTRLFV AEPVTARSGS FVGTHEYVAP
301: EVASGGSHGN AVDWWAFGVF LYEMIYGKTP FVAPTNDVIL RNIVKRQLSF PTDSPATMFE LHARNLISGL LNKDPTKRLG SRRGAAEVKV HPFFKGLNFA
401: LIRTLTPPEI PSSVVKKPMK SATFSGRSSN KPAAFDYF
Arabidopsis Description
PIDPID [Source:UniProtKB/TrEMBL;Acc:A0A178VTE5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.