Factsheet for TraesCS7D01G478800.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, vacuole

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, vacuole
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G344300.1
TraesCS2A01G521400.2
TraesCS2B01G341800.2
TraesCS2B01G550700.2
TraesCS2D01G322600.1
TraesCS2D01G523100.2
TraesCS3A01G375200.3
TraesCS3B01G407400.2
TraesCS3D01G367700.1
TraesCS5A01G037100.1
TraesCS5A01G375200.1
TraesCS5B01G037900.1
TraesCS5B01G377300.1
TraesCS5D01G044800.1
TraesCS6A01G310200.1
TraesCS6B01G340100.1
TraesCS6D01G289600.1
TraesCS7A01G194600.1
TraesCS7A01G284900.1
TraesCS7B01G100200.1
TraesCS7B01G181700.1
TraesCS7B01G498100.1
TraesCS7D01G196200.1
TraesCS7D01G284100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57090.1	TraesCS6A01G310200.1	AT1G59980.1	18047472
AT5G57090.1	TraesCS6B01G340100.1	AT1G59980.1	18047472
AT5G57090.1	TraesCS6D01G289600.1	AT1G59980.1	18047472
AT5G57090.1	TraesCS7A01G194600.1	AT1G59980.1	18047472
AT5G57090.1	TraesCS7B01G100200.1	AT1G59980.1	18047472
AT5G57090.1	TraesCS7B01G498100.1	AT1G59980.1	18047472
AT5G57090.1	TraesCS7D01G196200.1	AT1G59980.1	18047472
AT5G57090.1	TraesCS5A01G037100.1	AT2G34650.1	17889649
AT5G57090.1	TraesCS5A01G375200.1	AT2G34650.1	17889649
AT5G57090.1	TraesCS5B01G037900.1	AT2G34650.1	17889649
AT5G57090.1	TraesCS5B01G377300.1	AT2G34650.1	17889649
AT5G57090.1	TraesCS5D01G044800.1	AT2G34650.1	17889649
AT5G57090.1	TraesCS7A01G284900.1	AT2G36910.1	17237354
AT5G57090.1	TraesCS7B01G181700.1	AT2G36910.1	17237354
AT5G57090.1	TraesCS7D01G284100.1	AT2G36910.1	17237354
AT5G57090.1	TraesCS2A01G344300.1	AT3G28860.1	17237354
AT5G57090.1	TraesCS2A01G521400.2	AT3G28860.1	17237354
AT5G57090.1	TraesCS2B01G341800.2	AT3G28860.1	17237354
AT5G57090.1	TraesCS2B01G550700.2	AT3G28860.1	17237354
AT5G57090.1	TraesCS2D01G322600.1	AT3G28860.1	17237354
AT5G57090.1	TraesCS2D01G523100.2	AT3G28860.1	17237354
AT5G57090.1	TraesCS3A01G375200.3	AT5G06140.1	16936718
AT5G57090.1	TraesCS3B01G407400.2	AT5G06140.1	16936718
AT5G57090.1	TraesCS3D01G367700.1	AT5G06140.1	16936718

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G398100.1	Wheat	golgi, plasma membrane, vacuole	99.53	99.68
TraesCS7A01G492400.1	Wheat	golgi, plasma membrane, vacuole	99.21	99.37
HORVU7Hr1G110470.7	Barley	golgi, plasma membrane, vacuole	98.42	98.27
EER88769	Sorghum	plasma membrane	89.26	90.26
Zm00001d046893_P001	Maize	golgi, plasma membrane, vacuole	89.42	88.99
Os06t0660200-01	Rice	plasma membrane	88.47	88.89
GSMUA_Achr1P15720_001	Banana	plasma membrane	63.19	77.97
CDY38263	Canola	plasma membrane	61.61	67.47
CDY11886	Canola	plasma membrane	65.88	67.37
KRH02749	Soybean	plasma membrane	67.14	66.72
PGSC0003DMT400048251	Potato	plasma membrane	66.19	66.4
KRH19119	Soybean	endoplasmic reticulum	67.14	66.2
Solyc07g006900.1.1	Tomato	plasma membrane	65.72	65.93
Bra002763.1-P	Field mustard	plasma membrane	61.93	65.88
CDY20694	Canola	plasma membrane	66.03	65.83
VIT_11s0052g00440.t01	Wine grape	plasma membrane	65.24	65.56
CDY69709	Canola	plasma membrane	62.56	65.35
AT5G57090.1	Thale cress	golgi, plasma membrane, vacuole	66.67	65.22
Bra006834.1-P	Field mustard	plasma membrane	65.88	64.95
CDX88606	Canola	plasma membrane	65.72	64.7
CDY53978	Canola	plasma membrane	60.35	64.09
Bra035648.1-P	Field mustard	plasma membrane	66.51	63.69
TraesCS4D01G125300.1	Wheat	plasma membrane	56.24	62.9
TraesCS6D01G287800.1	Wheat	plasma membrane	56.71	60.95
TraesCS7D01G191600.1	Wheat	plasma membrane	56.08	60.58
TraesCS3D01G221900.1	Wheat	plasma membrane	55.13	59.15
TraesCS3D01G247700.1	Wheat	plasma membrane	30.02	53.22
TraesCS1D01G422900.1	Wheat	golgi, plasma membrane, vacuole	48.97	52.01
TraesCS5D01G291800.1	Wheat	extracellular, plasma membrane, vacuole	27.65	47.68
TraesCS3D01G421600.1	Wheat	plasma membrane	27.01	45.24
TraesCS7D01G259700.1	Wheat	plasma membrane, vacuole	26.22	43.68
TraesCS5D01G293300.1	Wheat	plasma membrane	25.43	42.71
TraesCS5D01G293000.1	Wheat	golgi, plasma membrane, vacuole	24.8	41.64
TraesCS5D01G293100.1	Wheat	golgi, plasma membrane, vacuole	24.96	40.83
TraesCS7D01G446900.1	Wheat	plasma membrane	17.22	38.25
TraesCS3D01G324800.1	Wheat	plasma membrane	25.91	38.05

Protein Annotations

MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	InterPro:Auxin_eff_plant	GO:GO:0000323	GO:GO:0001666	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005886	GO:GO:0006810	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009605	GO:GO:0009606	GO:GO:0009628	GO:GO:0009719	GO:GO:0009723	GO:GO:0009733
GO:GO:0009749	GO:GO:0009921	GO:GO:0009925	GO:GO:0009926	GO:GO:0009958	GO:GO:0009987
GO:GO:0010315	GO:GO:0010329	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:Mem_trans
PFAM:PF03547	InterPro:PIN2	PANTHER:PTHR31752	PANTHER:PTHR31752:SF4	TIGRFAMs:TIGR00946	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS7D01G478800	EnsemblPlants:TraesCS7D01G478800.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7D:+:589512708..589515843

Molecular Weight (calculated)

67420.1 Da

IEP (calculated)

9.819

GRAVY (calculated)

0.249

Length

633 amino acids

Sequence
(BLAST)

001: MITGKDIYDV LAAVVPLYVA MFMAYGSVRW WGIFTPDQCS GINRFVAVFA VPLLSFHFIS TNDPYAMDYR FLAADSLQKL VILAALAVWH NVLSRYRCRG
101: GTEAGEASSL DWTITLFSLA TLPNTLVMGI PLLRAMYGDF SGSLMVQIVV LQSVIWYTLM LFLFEYRGAK ALISEQFPPD VGASIASFRV DSDVVSLNGR
201: EALHADAEVG RDGRVHVVIR RSASGSTTGG HGAGRSGIYR GASNAMTPRA SNLTGVEIYS LQTSREPTPR QSSFNQSDFY SMFNGSKLAS PKGQPPVAGG
301: GGARGQGLDE QVANKFKGGE AAAPYPAPNP GMMMPAPRRK KELGGSNSNS NKELHMFVWS SSASPVSEAN LRNAVNHAAS TDFAAAPPAA ATPRDGATPR
401: GVSGTVTPVL KKDASSGAVE VEIEDGMMKS PATGLGAKFP VSGSPYVAPR KKGADVPGLE EAAHPMPPAS VMTRLILIMV WRKLIRNPNT YSSLIGLVWS
501: LVSFRWNIQM PTIIKGSISI LSDAGLGMAM FSLGLFMALQ PKIISCGKSV ATFAMAVRFL TGPAVIAATS IAVGLRGVLL HVAIVQAALP QGIVPFVFAK
601: EYNCHPQILS TAVIFGMLVA LPITILYYVL LGI

Best Arabidopsis Sequence Match ( AT5G57090.1 )
(BLAST)

001: MITGKDMYDV LAAMVPLYVA MILAYGSVRW WGIFTPDQCS GINRFVAVFA VPLLSFHFIS SNDPYAMNYH FLAADSLQKV VILAALFLWQ AFSRRGSLEW
101: MITLFSLSTL PNTLVMGIPL LRAMYGDFSG NLMVQIVVLQ SIIWYTLMLF LFEFRGAKLL ISEQFPETAG SITSFRVDSD VISLNGREPL QTDAEIGDDG
201: KLHVVVRRSS AASSMISSFN KSHGGGLNSS MITPRASNLT GVEIYSVQSS REPTPRASSF NQTDFYAMFN ASKAPSPRHG YTNSYGGAGA GPGGDVYSLQ
301: SSKGVTPRTS NFDEEVMKTA KKAGRGGRSM SGELYNNNSV PSYPPPNPMF TGSTSGASGV KKKESGGGGS GGGVGVGGQN KEMNMFVWSS SASPVSEANA
401: KNAMTRGSST DVSTDPKVSI PPHDNLATKA MQNLIENMSP GRKGHVEMDQ DGNNGGKSPY MGKKGSDVED GGPGPRKQQM PPASVMTRLI LIMVWRKLIR
501: NPNTYSSLFG LAWSLVSFKW NIKMPTIMSG SISILSDAGL GMAMFSLGLF MALQPKIIAC GKSVAGFAMA VRFLTGPAVI AATSIAIGIR GDLLHIAIVQ
601: AALPQGIVPF VFAKEYNVHP DILSTAVIFG MLVALPVTVL YYVLLGL

Arabidopsis Description

PIN2Auxin efflux carrier component 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU77]
SUBAcon: [plasma membrane,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.