Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G341800.2 | Wheat | cytosol, peroxisome, plasma membrane | 99.13 | 99.05 |
| TraesCS2D01G322600.1 | Wheat | cytosol, peroxisome, plasma membrane | 98.97 | 98.97 |
| HORVU2Hr1G080200.1 | Barley | plasma membrane | 98.18 | 97.87 |
| Os04t0459000-01 | Rice | plasma membrane | 93.43 | 93.73 |
| EES12287 | Sorghum | cytosol, peroxisome, plasma membrane | 92.95 | 93.03 |
| Zm00001d025590_P002 | Maize | cytosol, nucleus, plasma membrane | 92.95 | 92.22 |
| GSMUA_Achr8P24160_001 | Banana | plasma membrane | 79.65 | 89.26 |
| VIT_14s0108g00430.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 83.93 | 84.8 |
| KRH18485 | Soybean | endoplasmic reticulum, mitochondrion | 83.53 | 84.47 |
| KRG93519 | Soybean | cytosol, peroxisome, plasma membrane | 83.14 | 84.0 |
| PGSC0003DMT400003590 | Potato | plasma membrane | 83.06 | 83.99 |
| Solyc02g087870.2.1 | Tomato | plasma membrane | 82.98 | 83.91 |
| TraesCS2A01G521400.2 | Wheat | cytosol, peroxisome, plasma membrane | 82.82 | 82.62 |
| AT3G28860.1 | Thale cress | plasma membrane | 81.47 | 82.19 |
| Bra039042.1-P | Field mustard | plasma membrane | 81.16 | 81.87 |
| Bra025359.1-P | Field mustard | plasma membrane | 81.08 | 81.79 |
| CDY20012 | Canola | plasma membrane | 81.08 | 81.72 |
| CDY00109 | Canola | plasma membrane | 80.52 | 81.69 |
| CDX86408 | Canola | plasma membrane | 79.89 | 81.57 |
| CDY65012 | Canola | plasma membrane | 80.92 | 81.56 |
| GSMUA_Achr4P09980_001 | Banana | plasma membrane | 72.21 | 79.72 |
| TraesCS7A01G284900.1 | Wheat | plasma membrane | 51.31 | 52.01 |
| TraesCS6A01G264900.3 | Wheat | golgi | 50.59 | 50.47 |
| TraesCS4A01G370600.1 | Wheat | plasma membrane | 45.13 | 46.27 |
| TraesCS3A01G117600.3 | Wheat | peroxisome, plasma membrane | 40.14 | 43.63 |
| TraesCS3A01G257500.1 | Wheat | plasma membrane | 43.39 | 43.6 |
| TraesCS3A01G258200.1 | Wheat | peroxisome | 42.76 | 43.2 |
| TraesCS1A01G081300.1 | Wheat | unclear | 43.55 | 43.1 |
| TraesCS2A01G009600.1 | Wheat | plasma membrane | 41.81 | 42.14 |
| TraesCS2A01G009900.1 | Wheat | plasma membrane | 41.96 | 42.13 |
| TraesCS3A01G369700.1 | Wheat | peroxisome | 42.6 | 42.03 |
| TraesCS1A01G368500.1 | Wheat | cytosol, peroxisome, plasma membrane | 41.65 | 41.58 |
| TraesCS3A01G258400.3 | Wheat | peroxisome | 41.09 | 41.26 |
| TraesCS3A01G258000.1 | Wheat | mitochondrion | 42.83 | 40.8 |
| TraesCS7A01G303200.1 | Wheat | cytosol | 25.18 | 40.66 |
| TraesCS2A01G323900.1 | Wheat | plasma membrane | 40.3 | 40.21 |
| TraesCS5A01G495900.1 | Wheat | plasma membrane | 39.91 | 39.78 |
| TraesCS3A01G536300.1 | Wheat | cytosol, plasma membrane, vacuole | 42.12 | 37.97 |
| TraesCS7A01G303100.1 | Wheat | peroxisome | 37.69 | 37.66 |
| TraesCS4A01G101600.3 | Wheat | cytosol, plasma membrane, plastid | 41.96 | 37.62 |
| TraesCS4A01G006900.1 | Wheat | peroxisome | 40.22 | 33.98 |
Protein Annotations
| MapMan:11.2.4.3 | MapMan:24.1.3.1.1 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase | InterPro:ABC1_TM_dom | InterPro:ABC1_TM_sf |
| InterPro:ABC_transporter-like | InterPro:ABC_transporter_CS | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016787 | GO:GO:0016887 | GO:GO:0042626 | GO:GO:0055085 | InterPro:IPR003439 |
| InterPro:IPR011527 | InterPro:IPR036640 | InterPro:P-loop_NTPase | PFAM:PF00005 | PFAM:PF00664 | ScanProsite:PS00211 |
| PFscan:PS50893 | PFscan:PS50929 | PANTHER:PTHR24221 | PANTHER:PTHR24221:SF382 | SMART:SM00382 | SUPFAM:SSF52540 |
| SUPFAM:SSF90123 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS2A01G344300 | EnsemblPlants:TraesCS2A01G344300.1 | TIGR:cd03249 | SEG:seg |
Description
No Description!
Coordinates
chr2A:-:581164162..581170254
Molecular Weight (calculated)
137293.0 Da
IEP (calculated)
8.608
GRAVY (calculated)
0.143
Length
1263 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAEETGKAEA SAGAASCGGG GSEAVKKRAE QSVAFHELFS FADPLDWLLM AAGSAGAVVH GAAMPFFFLL FGELVNGFGK NQHHLRRMTD EVSKYSLYFV
0101: YLGLVVCASS YLEIACWMYT GERQVGALRR RYLEAVLRQD VGFFDTDART GDVVFSVSTD TLLVQDAIGE KVGNFIHYLA TFLAGLVVGF VSAWRLALLS
0201: IAVIPGIAFA GGLYAYTLTG LTSKSRDSYA NAGIIAEQAI AQVRTVYSYV GESKALNSYS EAIQSTLKLG YKAGMAKGLG IGCTYGIACM SWALVFWYAG
0301: VFIRSGQTDG GKAFTAIFSA IVGGLSLGQS FSNLGAFSKG KIAGYKLLEV IRQRPTIVQD STDGRCLDEV HGNIEFKEVS FSYPSRPDVM VFRDFSLFFP
0401: AGKTAAVVGG SGSGKSTVVS LIERFYDPNQ GQVLLDNADI KSLQLKWLRD QIGLVNQEPA LFATTIIDNI LYGKPDATMA EVEAAASAAN AHSFIALLPN
0501: GYNTQVGERG LQLSGGQKQR IAIARAMLKN PKILLLDEAT SALDAGSESI VQEALDRIMI GRTTVVVAHR LSTIRNVDMI AVIQQGQVVE TGTHDELLAK
0601: GSSGAYAALI RFQEMARNRD FRGASTRKNR SSRLSNSLST RSLSLRSGSL RNLSYSYSTG ADGRIEMVSN ADNDRKYPAP KGYFFKLLKL NAPEWPYTVL
0701: GAIGSIMSGF IGPTFAIVMS NMIEVFYFRD PNAMERKTRE YVFIYIGTGF YAVVAYLIQH YFFSIMGENL TTRVRRMMLA VILRNDVGWF DEEENNSSLV
0801: AARLNTEAAD VKSAIAERIS VILQNMTSLL VSFIVGFIIE WRVAILILVT FPLLVLANFA QQLSMKGFAG DTAKAHAKTS MIAGEGVSNI RTVAAFNAQD
0901: KILSLFCSEL RAPQMHSLRR SQIAGVLYGL SQLSLYASEA LILWYGAHLV RHHVSTFSRV IKVFVVLVIT ANSVAETVSL APEIVRGGES VRSVFAVLNS
1001: RTRIDPDEPE AEQVEKVRGE IELRHVDFAY PSRPDVMVFK EFSLRIRAGQ SQALVGASGS GKSTVIALIE RFYDPMAGKV MIDGKDIRRL NLKSLRLKIG
1101: LVQQEPVLFA TSILENIAYG KDGVTEEEVV EAAKVANVHG FVSALPDGYR TPVGERGVQL SGGQKQRIAI ARAVLKDPAI LLLDEATSAL DAESECVLQE
1201: ALGRIMKGRT TVLVAHRLST IRCVDSIAVV QDGRVLEQGG HGDLVARPDG AYSRLLQLQL HHG
0101: YLGLVVCASS YLEIACWMYT GERQVGALRR RYLEAVLRQD VGFFDTDART GDVVFSVSTD TLLVQDAIGE KVGNFIHYLA TFLAGLVVGF VSAWRLALLS
0201: IAVIPGIAFA GGLYAYTLTG LTSKSRDSYA NAGIIAEQAI AQVRTVYSYV GESKALNSYS EAIQSTLKLG YKAGMAKGLG IGCTYGIACM SWALVFWYAG
0301: VFIRSGQTDG GKAFTAIFSA IVGGLSLGQS FSNLGAFSKG KIAGYKLLEV IRQRPTIVQD STDGRCLDEV HGNIEFKEVS FSYPSRPDVM VFRDFSLFFP
0401: AGKTAAVVGG SGSGKSTVVS LIERFYDPNQ GQVLLDNADI KSLQLKWLRD QIGLVNQEPA LFATTIIDNI LYGKPDATMA EVEAAASAAN AHSFIALLPN
0501: GYNTQVGERG LQLSGGQKQR IAIARAMLKN PKILLLDEAT SALDAGSESI VQEALDRIMI GRTTVVVAHR LSTIRNVDMI AVIQQGQVVE TGTHDELLAK
0601: GSSGAYAALI RFQEMARNRD FRGASTRKNR SSRLSNSLST RSLSLRSGSL RNLSYSYSTG ADGRIEMVSN ADNDRKYPAP KGYFFKLLKL NAPEWPYTVL
0701: GAIGSIMSGF IGPTFAIVMS NMIEVFYFRD PNAMERKTRE YVFIYIGTGF YAVVAYLIQH YFFSIMGENL TTRVRRMMLA VILRNDVGWF DEEENNSSLV
0801: AARLNTEAAD VKSAIAERIS VILQNMTSLL VSFIVGFIIE WRVAILILVT FPLLVLANFA QQLSMKGFAG DTAKAHAKTS MIAGEGVSNI RTVAAFNAQD
0901: KILSLFCSEL RAPQMHSLRR SQIAGVLYGL SQLSLYASEA LILWYGAHLV RHHVSTFSRV IKVFVVLVIT ANSVAETVSL APEIVRGGES VRSVFAVLNS
1001: RTRIDPDEPE AEQVEKVRGE IELRHVDFAY PSRPDVMVFK EFSLRIRAGQ SQALVGASGS GKSTVIALIE RFYDPMAGKV MIDGKDIRRL NLKSLRLKIG
1101: LVQQEPVLFA TSILENIAYG KDGVTEEEVV EAAKVANVHG FVSALPDGYR TPVGERGVQL SGGQKQRIAI ARAVLKDPAI LLLDEATSAL DAESECVLQE
1201: ALGRIMKGRT TVLVAHRLST IRCVDSIAVV QDGRVLEQGG HGDLVARPDG AYSRLLQLQL HHG
0001: MSETNTTDAK TVPAEAEKKK EQSLPFFKLF SFADKFDYLL MFVGSLGAIV HGSSMPVFFL LFGQMVNGFG KNQMDLHQMV HEVSRYSLYF VYLGLVVCFS
0101: SYAEIACWMY SGERQVAALR KKYLEAVLKQ DVGFFDTDAR TGDIVFSVST DTLLVQDAIS EKVGNFIHYL STFLAGLVVG FVSAWKLALL SVAVIPGIAF
0201: AGGLYAYTLT GITSKSRESY ANAGVIAEQA IAQVRTVYSY VGESKALNAY SDAIQYTLKL GYKAGMAKGL GLGCTYGIAC MSWALVFWYA GVFIRNGQTD
0301: GGKAFTAIFS AIVGGMSLGQ SFSNLGAFSK GKAAGYKLME IINQRPTIIQ DPLDGKCLDQ VHGNIEFKDV TFSYPSRPDV MIFRNFNIFF PSGKTVAVVG
0401: GSGSGKSTVV SLIERFYDPN SGQILLDGVE IKTLQLKFLR EQIGLVNQEP ALFATTILEN ILYGKPDATM VEVEAAASAA NAHSFITLLP KGYDTQVGER
0501: GVQLSGGQKQ RIAIARAMLK DPKILLLDEA TSALDASSES IVQEALDRVM VGRTTVVVAH RLCTIRNVDS IAVIQQGQVV ETGTHEELIA KSGAYASLIR
0601: FQEMVGTRDF SNPSTRRTRS TRLSHSLSTK SLSLRSGSLR NLSYSYSTGA DGRIEMISNA ETDRKTRAPE NYFYRLLKLN SPEWPYSIMG AVGSILSGFI
0701: GPTFAIVMSN MIEVFYYTDY DSMERKTKEY VFIYIGAGLY AVGAYLIQHY FFSIMGENLT TRVRRMMLSA ILRNEVGWFD EDEHNSSLIA ARLATDAADV
0801: KSAIAERISV ILQNMTSLLT SFIVAFIVEW RVSLLILGTF PLLVLANFAQ QLSLKGFAGD TAKAHAKTSM IAGEGVSNIR TVAAFNAQSK ILSLFCHELR
0901: VPQKRSLYRS QTSGFLFGLS QLALYGSEAL ILWYGAHLVS KGVSTFSKVI KVFVVLVITA NSVAETVSLA PEIIRGGEAV GSVFSVLDRQ TRIDPDDADA
1001: DPVETIRGDI EFRHVDFAYP SRPDVMVFRD FNLRIRAGHS QALVGASGSG KSSVIAMIER FYDPLAGKVM IDGKDIRRLN LKSLRLKIGL VQQEPALFAA
1101: TIFDNIAYGK DGATESEVID AARAANAHGF ISGLPEGYKT PVGERGVQLS GGQKQRIAIA RAVLKNPTVL LLDEATSALD AESECVLQEA LERLMRGRTT
1201: VVVAHRLSTI RGVDCIGVIQ DGRIVEQGSH SELVSRPEGA YSRLLQLQTH RI
0101: SYAEIACWMY SGERQVAALR KKYLEAVLKQ DVGFFDTDAR TGDIVFSVST DTLLVQDAIS EKVGNFIHYL STFLAGLVVG FVSAWKLALL SVAVIPGIAF
0201: AGGLYAYTLT GITSKSRESY ANAGVIAEQA IAQVRTVYSY VGESKALNAY SDAIQYTLKL GYKAGMAKGL GLGCTYGIAC MSWALVFWYA GVFIRNGQTD
0301: GGKAFTAIFS AIVGGMSLGQ SFSNLGAFSK GKAAGYKLME IINQRPTIIQ DPLDGKCLDQ VHGNIEFKDV TFSYPSRPDV MIFRNFNIFF PSGKTVAVVG
0401: GSGSGKSTVV SLIERFYDPN SGQILLDGVE IKTLQLKFLR EQIGLVNQEP ALFATTILEN ILYGKPDATM VEVEAAASAA NAHSFITLLP KGYDTQVGER
0501: GVQLSGGQKQ RIAIARAMLK DPKILLLDEA TSALDASSES IVQEALDRVM VGRTTVVVAH RLCTIRNVDS IAVIQQGQVV ETGTHEELIA KSGAYASLIR
0601: FQEMVGTRDF SNPSTRRTRS TRLSHSLSTK SLSLRSGSLR NLSYSYSTGA DGRIEMISNA ETDRKTRAPE NYFYRLLKLN SPEWPYSIMG AVGSILSGFI
0701: GPTFAIVMSN MIEVFYYTDY DSMERKTKEY VFIYIGAGLY AVGAYLIQHY FFSIMGENLT TRVRRMMLSA ILRNEVGWFD EDEHNSSLIA ARLATDAADV
0801: KSAIAERISV ILQNMTSLLT SFIVAFIVEW RVSLLILGTF PLLVLANFAQ QLSLKGFAGD TAKAHAKTSM IAGEGVSNIR TVAAFNAQSK ILSLFCHELR
0901: VPQKRSLYRS QTSGFLFGLS QLALYGSEAL ILWYGAHLVS KGVSTFSKVI KVFVVLVITA NSVAETVSLA PEIIRGGEAV GSVFSVLDRQ TRIDPDDADA
1001: DPVETIRGDI EFRHVDFAYP SRPDVMVFRD FNLRIRAGHS QALVGASGSG KSSVIAMIER FYDPLAGKVM IDGKDIRRLN LKSLRLKIGL VQQEPALFAA
1101: TIFDNIAYGK DGATESEVID AARAANAHGF ISGLPEGYKT PVGERGVQLS GGQKQRIAIA RAVLKNPTVL LLDEATSALD AESECVLQEA LERLMRGRTT
1201: VVVAHRLSTI RGVDCIGVIQ DGRIVEQGSH SELVSRPEGA YSRLLQLQTH RI
Arabidopsis Description
ABCB19ABC transporter B family member 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJX0]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.