Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g087470.2.1 | |
| Solyc03g118740.2.1 | |
| Solyc07g006900.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G28860.1 | Solyc03g118740.2.1 | AT1G73590.1 | 17237354 |
| AT3G28860.1 | Solyc01g087470.2.1 | AT3G21640.1 | 14517332 |
| AT3G28860.1 | Solyc07g006900.1.1 | AT5G57090.1 | 17237354 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400003590 | Potato | plasma membrane | 99.52 | 99.52 |
| KRH18485 | Soybean | endoplasmic reticulum, mitochondrion | 93.27 | 93.27 |
| VIT_14s0108g00430.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 92.95 | 92.88 |
| KRG93519 | Soybean | cytosol, peroxisome, plasma membrane | 92.79 | 92.72 |
| CDY65012 | Canola | plasma membrane | 90.39 | 90.1 |
| Bra025359.1-P | Field mustard | plasma membrane | 90.31 | 90.1 |
| AT3G28860.1 | Thale cress | plasma membrane | 90.23 | 90.02 |
| CDX86408 | Canola | plasma membrane | 89.03 | 89.89 |
| Bra039042.1-P | Field mustard | plasma membrane | 90.07 | 89.86 |
| CDY00109 | Canola | plasma membrane | 89.35 | 89.64 |
| CDY20012 | Canola | plasma membrane | 89.91 | 89.62 |
| GSMUA_Achr8P24160_001 | Banana | plasma membrane | 79.58 | 88.2 |
| Os04t0459000-01 | Rice | plasma membrane | 85.03 | 84.35 |
| TraesCS2D01G322600.1 | Wheat | cytosol, peroxisome, plasma membrane | 84.39 | 83.45 |
| EES12287 | Sorghum | cytosol, peroxisome, plasma membrane | 84.23 | 83.36 |
| TraesCS2B01G341800.2 | Wheat | cytosol, peroxisome, plasma membrane | 84.31 | 83.31 |
| HORVU2Hr1G080200.1 | Barley | plasma membrane | 84.23 | 83.03 |
| TraesCS2A01G344300.1 | Wheat | cytosol, peroxisome, plasma membrane | 83.91 | 82.98 |
| Zm00001d025590_P002 | Maize | cytosol, nucleus, plasma membrane | 84.55 | 82.95 |
| EES12952 | Sorghum | cytosol, peroxisome, plasma membrane | 83.91 | 82.78 |
| Zm00001d026426_P005 | Maize | cytosol | 83.43 | 81.85 |
| Os04t0642000-01 | Rice | cytosol, peroxisome, plasma membrane | 40.03 | 81.7 |
| Zm00001d002119_P006 | Maize | cytosol | 82.71 | 81.6 |
| TraesCS2B01G550700.2 | Wheat | plasma membrane | 81.67 | 81.15 |
| TraesCS2A01G521400.2 | Wheat | cytosol, peroxisome, plasma membrane | 81.91 | 80.81 |
| TraesCS2D01G523100.2 | Wheat | cytosol | 82.23 | 80.8 |
| HORVU2Hr1G115180.1 | Barley | cytosol, peroxisome, plasma membrane | 82.15 | 80.79 |
| GSMUA_Achr4P09980_001 | Banana | plasma membrane | 73.18 | 79.9 |
| Solyc08g076720.2.1 | Tomato | unclear | 51.24 | 50.91 |
| Solyc09g008240.2.1 | Tomato | peroxisome | 53.16 | 50.53 |
| Solyc05g013890.1.1 | Tomato | cytosol, plasma membrane | 34.99 | 45.81 |
| Solyc02g071350.2.1 | Tomato | plastid | 44.04 | 43.55 |
| Solyc06g009280.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 44.84 | 43.44 |
| Solyc03g093650.2.1 | Tomato | plasma membrane | 42.43 | 43.19 |
| Solyc03g005860.2.1 | Tomato | plasma membrane | 43.31 | 42.97 |
| Solyc07g064120.1.1 | Tomato | plasma membrane | 43.15 | 42.81 |
| Solyc12g098840.1.1 | Tomato | peroxisome | 43.63 | 42.58 |
| Solyc02g071340.1.1 | Tomato | plasma membrane | 42.67 | 42.2 |
| Solyc06g072960.1.1 | Tomato | peroxisome | 34.59 | 42.02 |
| Solyc07g018130.1.1 | Tomato | plasma membrane | 42.27 | 41.41 |
| Solyc11g067300.1.1 | Tomato | plasma membrane | 41.55 | 41.19 |
| Solyc06g009290.2.1 | Tomato | nucleus | 45.96 | 41.0 |
| Solyc04g010310.2.1 | Tomato | plasma membrane | 40.43 | 39.3 |
Protein Annotations
| Gene3D:1.20.1560.10 | MapMan:11.2.4.3 | MapMan:24.1.3.1.1 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase | InterPro:ABC1_TM_dom |
| InterPro:ABC1_TM_sf | InterPro:ABC_transporter-like | InterPro:ABC_transporter_CS | UniProt:B6CG42 | ncoils:Coil | EMBL:EU161279 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 |
| GO:GO:0016887 | GO:GO:0042626 | GO:GO:0055085 | InterPro:IPR003439 | InterPro:IPR011527 | InterPro:IPR036640 |
| InterPro:P-loop_NTPase | PFAM:PF00005 | PFAM:PF00664 | ScanProsite:PS00211 | PFscan:PS50893 | PFscan:PS50929 |
| PANTHER:PTHR24221 | PANTHER:PTHR24221:SF382 | SMART:SM00382 | SUPFAM:SSF52540 | SUPFAM:SSF90123 | EnsemblPlantsGene:Solyc02g087870.2 |
| EnsemblPlants:Solyc02g087870.2.1 | TMHMM:TMhelix | UniParc:UPI000181BBAA | SEG:seg | : | : |
Description
L04 [Source:UniProtKB/TrEMBL;Acc:B6CG42]
Coordinates
chr2:-:50137483..50145188
Molecular Weight (calculated)
136172.0 Da
IEP (calculated)
8.072
GRAVY (calculated)
0.109
Length
1249 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAETTEGKSM PEAEKKKEQS LPFYQLFSFA DKYDYLLMTC GSIGAILHGS SMPVFFLLFG EMVNGFGKNQ MDLHKMTHEV SKYALYFVYL GLIVCASSYA
0101: EIGCWMYTGE RQVSALRKKY LEAVLKQDVG FFDTDARTGD IVFSVSTDTL LVQDAISEKV GNFIHYLSTF LAGLVVGFVS AWRLALLSVA VIPGIAFAGG
0201: LYAYTLTGLT SKSRESYANA GIIAEQAIAQ VRTVYSYVGE TKALNSYSDA IQNTLKLGYK AGMAKGLGLG CTYGIACMSW ALVFWYAGVF IRNGQSDGGK
0301: AFTAIFSAIV GGMSLGQSFS NLGAFSKGKA AGYKLMEIIK QKPTIVQDTL DGKCLSEVSG NIEFKNVTFS YPSRPDVIIF RDFCIFFPAG KTVAVVGGSG
0401: SGKSTVVSLI ERFYDPNDGQ VLLDNVDIKT LQLRWLRDQI GLVNQEPALF ATTILENILY GKPDATMAEV EAATCASNAH NFITLLPNGY NTQVGERGVQ
0501: LSGGQKQRIA IARAMLKNPK ILLLDEATSA LDAGSESIVQ EALDRLMVGR TTVVVAHRLS TIRNVDSIAV IQQGQVVETG THEELISKAG AYASLIRFQE
0601: MVGNRDFSNP STRRTRSTRL SHSLSTKSLS LRSGSLRNLS YSYSTGADGR IEMISNAETD RKNPAPQNYF CRLLKLNAPE WPYSIMGAVG SVLSGFIGPT
0701: FAIVMSNMIE VFYYTNPATM ERKTKEYVFI YIGAGLYAVV AYLIQHYFFS IMGENLTTRV RRMMLAAILR NEVGWFDEEE NNSSLLAARL ATDAADVKSA
0801: IAERISVILQ NMTSLLTSFI VAFIVEWRVS LLILATFPLL VLANFAQQLS LKGFAGDTAK AHAKTSMIAG EGVSNIRTVA AFNAQEKIIS LFSQELRVPQ
0901: MQSLRRSQMS GLLFGISQLA LYGSEALILW YGAHLVNNGV STFSKVIKVF VVLVITANSV AETVSLAPEI IRGGEAVGSV FSILDRSTRV DPDDPEGDPV
1001: ESIRGDIELR HVDFAYPSRP DVSVFKDLNL RIRAGQSQAL VGASGSGKSS VIALIERFYD PTGGKVMIDG KDIRRLNLKS LRLKIGLVQQ EPALFAASIF
1101: ENIAYGKEGA TEAEVIEAAR AANVHTFVSG LPEGYKTPVG ERGVQLSGGQ KQRIAIARAV LKDPSILLLD EATSALDAES ECVLQEALER LMRGRTTVLV
1201: AHRLSTIRNV DTIGVVQDGR IVEQGSHSEL ISRPEGAYSR LLQLQHHRI
0101: EIGCWMYTGE RQVSALRKKY LEAVLKQDVG FFDTDARTGD IVFSVSTDTL LVQDAISEKV GNFIHYLSTF LAGLVVGFVS AWRLALLSVA VIPGIAFAGG
0201: LYAYTLTGLT SKSRESYANA GIIAEQAIAQ VRTVYSYVGE TKALNSYSDA IQNTLKLGYK AGMAKGLGLG CTYGIACMSW ALVFWYAGVF IRNGQSDGGK
0301: AFTAIFSAIV GGMSLGQSFS NLGAFSKGKA AGYKLMEIIK QKPTIVQDTL DGKCLSEVSG NIEFKNVTFS YPSRPDVIIF RDFCIFFPAG KTVAVVGGSG
0401: SGKSTVVSLI ERFYDPNDGQ VLLDNVDIKT LQLRWLRDQI GLVNQEPALF ATTILENILY GKPDATMAEV EAATCASNAH NFITLLPNGY NTQVGERGVQ
0501: LSGGQKQRIA IARAMLKNPK ILLLDEATSA LDAGSESIVQ EALDRLMVGR TTVVVAHRLS TIRNVDSIAV IQQGQVVETG THEELISKAG AYASLIRFQE
0601: MVGNRDFSNP STRRTRSTRL SHSLSTKSLS LRSGSLRNLS YSYSTGADGR IEMISNAETD RKNPAPQNYF CRLLKLNAPE WPYSIMGAVG SVLSGFIGPT
0701: FAIVMSNMIE VFYYTNPATM ERKTKEYVFI YIGAGLYAVV AYLIQHYFFS IMGENLTTRV RRMMLAAILR NEVGWFDEEE NNSSLLAARL ATDAADVKSA
0801: IAERISVILQ NMTSLLTSFI VAFIVEWRVS LLILATFPLL VLANFAQQLS LKGFAGDTAK AHAKTSMIAG EGVSNIRTVA AFNAQEKIIS LFSQELRVPQ
0901: MQSLRRSQMS GLLFGISQLA LYGSEALILW YGAHLVNNGV STFSKVIKVF VVLVITANSV AETVSLAPEI IRGGEAVGSV FSILDRSTRV DPDDPEGDPV
1001: ESIRGDIELR HVDFAYPSRP DVSVFKDLNL RIRAGQSQAL VGASGSGKSS VIALIERFYD PTGGKVMIDG KDIRRLNLKS LRLKIGLVQQ EPALFAASIF
1101: ENIAYGKEGA TEAEVIEAAR AANVHTFVSG LPEGYKTPVG ERGVQLSGGQ KQRIAIARAV LKDPSILLLD EATSALDAES ECVLQEALER LMRGRTTVLV
1201: AHRLSTIRNV DTIGVVQDGR IVEQGSHSEL ISRPEGAYSR LLQLQHHRI
0001: MSETNTTDAK TVPAEAEKKK EQSLPFFKLF SFADKFDYLL MFVGSLGAIV HGSSMPVFFL LFGQMVNGFG KNQMDLHQMV HEVSRYSLYF VYLGLVVCFS
0101: SYAEIACWMY SGERQVAALR KKYLEAVLKQ DVGFFDTDAR TGDIVFSVST DTLLVQDAIS EKVGNFIHYL STFLAGLVVG FVSAWKLALL SVAVIPGIAF
0201: AGGLYAYTLT GITSKSRESY ANAGVIAEQA IAQVRTVYSY VGESKALNAY SDAIQYTLKL GYKAGMAKGL GLGCTYGIAC MSWALVFWYA GVFIRNGQTD
0301: GGKAFTAIFS AIVGGMSLGQ SFSNLGAFSK GKAAGYKLME IINQRPTIIQ DPLDGKCLDQ VHGNIEFKDV TFSYPSRPDV MIFRNFNIFF PSGKTVAVVG
0401: GSGSGKSTVV SLIERFYDPN SGQILLDGVE IKTLQLKFLR EQIGLVNQEP ALFATTILEN ILYGKPDATM VEVEAAASAA NAHSFITLLP KGYDTQVGER
0501: GVQLSGGQKQ RIAIARAMLK DPKILLLDEA TSALDASSES IVQEALDRVM VGRTTVVVAH RLCTIRNVDS IAVIQQGQVV ETGTHEELIA KSGAYASLIR
0601: FQEMVGTRDF SNPSTRRTRS TRLSHSLSTK SLSLRSGSLR NLSYSYSTGA DGRIEMISNA ETDRKTRAPE NYFYRLLKLN SPEWPYSIMG AVGSILSGFI
0701: GPTFAIVMSN MIEVFYYTDY DSMERKTKEY VFIYIGAGLY AVGAYLIQHY FFSIMGENLT TRVRRMMLSA ILRNEVGWFD EDEHNSSLIA ARLATDAADV
0801: KSAIAERISV ILQNMTSLLT SFIVAFIVEW RVSLLILGTF PLLVLANFAQ QLSLKGFAGD TAKAHAKTSM IAGEGVSNIR TVAAFNAQSK ILSLFCHELR
0901: VPQKRSLYRS QTSGFLFGLS QLALYGSEAL ILWYGAHLVS KGVSTFSKVI KVFVVLVITA NSVAETVSLA PEIIRGGEAV GSVFSVLDRQ TRIDPDDADA
1001: DPVETIRGDI EFRHVDFAYP SRPDVMVFRD FNLRIRAGHS QALVGASGSG KSSVIAMIER FYDPLAGKVM IDGKDIRRLN LKSLRLKIGL VQQEPALFAA
1101: TIFDNIAYGK DGATESEVID AARAANAHGF ISGLPEGYKT PVGERGVQLS GGQKQRIAIA RAVLKNPTVL LLDEATSALD AESECVLQEA LERLMRGRTT
1201: VVVAHRLSTI RGVDCIGVIQ DGRIVEQGSH SELVSRPEGA YSRLLQLQTH RI
0101: SYAEIACWMY SGERQVAALR KKYLEAVLKQ DVGFFDTDAR TGDIVFSVST DTLLVQDAIS EKVGNFIHYL STFLAGLVVG FVSAWKLALL SVAVIPGIAF
0201: AGGLYAYTLT GITSKSRESY ANAGVIAEQA IAQVRTVYSY VGESKALNAY SDAIQYTLKL GYKAGMAKGL GLGCTYGIAC MSWALVFWYA GVFIRNGQTD
0301: GGKAFTAIFS AIVGGMSLGQ SFSNLGAFSK GKAAGYKLME IINQRPTIIQ DPLDGKCLDQ VHGNIEFKDV TFSYPSRPDV MIFRNFNIFF PSGKTVAVVG
0401: GSGSGKSTVV SLIERFYDPN SGQILLDGVE IKTLQLKFLR EQIGLVNQEP ALFATTILEN ILYGKPDATM VEVEAAASAA NAHSFITLLP KGYDTQVGER
0501: GVQLSGGQKQ RIAIARAMLK DPKILLLDEA TSALDASSES IVQEALDRVM VGRTTVVVAH RLCTIRNVDS IAVIQQGQVV ETGTHEELIA KSGAYASLIR
0601: FQEMVGTRDF SNPSTRRTRS TRLSHSLSTK SLSLRSGSLR NLSYSYSTGA DGRIEMISNA ETDRKTRAPE NYFYRLLKLN SPEWPYSIMG AVGSILSGFI
0701: GPTFAIVMSN MIEVFYYTDY DSMERKTKEY VFIYIGAGLY AVGAYLIQHY FFSIMGENLT TRVRRMMLSA ILRNEVGWFD EDEHNSSLIA ARLATDAADV
0801: KSAIAERISV ILQNMTSLLT SFIVAFIVEW RVSLLILGTF PLLVLANFAQ QLSLKGFAGD TAKAHAKTSM IAGEGVSNIR TVAAFNAQSK ILSLFCHELR
0901: VPQKRSLYRS QTSGFLFGLS QLALYGSEAL ILWYGAHLVS KGVSTFSKVI KVFVVLVITA NSVAETVSLA PEIIRGGEAV GSVFSVLDRQ TRIDPDDADA
1001: DPVETIRGDI EFRHVDFAYP SRPDVMVFRD FNLRIRAGHS QALVGASGSG KSSVIAMIER FYDPLAGKVM IDGKDIRRLN LKSLRLKIGL VQQEPALFAA
1101: TIFDNIAYGK DGATESEVID AARAANAHGF ISGLPEGYKT PVGERGVQLS GGQKQRIAIA RAVLKNPTVL LLDEATSALD AESECVLQEA LERLMRGRTT
1201: VVVAHRLSTI RGVDCIGVIQ DGRIVEQGSH SELVSRPEGA YSRLLQLQTH RI
Arabidopsis Description
ABCB19ABC transporter B family member 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJX0]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.