Factsheet for Os04t0642000-01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os06t0660200-01
Os11t0148300-01
Os12t0145500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28860.1	Os11t0148300-01	AT3G21640.1	14517332
AT3G28860.1	Os12t0145500-01	AT3G21640.1	14517332
AT3G28860.1	Os06t0660200-01	AT5G57090.1	17237354

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12952	Sorghum	cytosol, peroxisome, plasma membrane	94.44	45.66
Zm00001d002119_P006	Maize	cytosol	93.79	45.34
Zm00001d026426_P005	Maize	cytosol	94.28	45.33
TraesCS2A01G521400.2	Wheat	cytosol, peroxisome, plasma membrane	92.81	44.87
HORVU2Hr1G115180.1	Barley	cytosol, peroxisome, plasma membrane	92.97	44.8
TraesCS2D01G523100.2	Wheat	cytosol	92.97	44.77
TraesCS2B01G550700.2	Wheat	plasma membrane	91.5	44.55
GSMUA_Achr4P09980_001	Banana	plasma membrane	80.88	43.27
GSMUA_Achr8P24160_001	Banana	plasma membrane	78.1	42.41
Os04t0459000-01	Rice	plasma membrane	85.78	41.7
VIT_14s0108g00430.t01	Wine grape	cytosol, peroxisome, plasma membrane	83.01	40.64
KRH18485	Soybean	endoplasmic reticulum, mitochondrion	82.19	40.27
KRG93519	Soybean	cytosol, peroxisome, plasma membrane	82.19	40.24
PGSC0003DMT400003590	Potato	plasma membrane	81.86	40.11
Solyc02g087870.2.1	Tomato	plasma membrane	81.7	40.03
CDY00109	Canola	plasma membrane	78.92	38.8
CDX86408	Canola	plasma membrane	78.27	38.72
AT3G28860.1	Thale cress	plasma membrane	79.08	38.66
Bra039042.1-P	Field mustard	plasma membrane	78.76	38.5
CDY20012	Canola	plasma membrane	78.59	38.39
Bra025359.1-P	Field mustard	plasma membrane	78.27	38.26
CDY65012	Canola	plasma membrane	78.27	38.23
Os01t0533900-01	Rice	endoplasmic reticulum, vacuole	41.01	30.06
Os02t0693700-02	Rice	plasma membrane	53.43	25.87
Os08t0564300-04	Rice	plasma membrane	51.63	23.51
Os02t0190300-01	Rice	plasma membrane	46.08	22.65
Os02t0190000-00	Rice	plasma membrane	45.42	22.37
Os05t0548500-00	Rice	plasma membrane	45.1	21.9
Os01t0695700-00	Rice	plasma membrane	43.79	21.15
Os03t0181675-00	Rice	cytosol, nucleus, peroxisome, plastid	18.95	19.9
Os03t0280000-01	Rice	plasma membrane	45.1	19.56
Os02t0323000-01	Rice	cytosol, peroxisome	13.4	19.39
Os01t0534700-00	Rice	plasma membrane	34.15	18.9
Os03t0181750-00	Rice	plasma membrane	24.35	15.44
Os01t0975900-02	Rice	plasma membrane	4.58	11.11
Os02t0189800-00	Rice	mitochondrion	10.46	8.56
Os01t0976000-01	Rice	nucleus	1.96	2.12
Os04t0481700-01	Rice	plasma membrane	0.0	0.0
Os05t0137200-01	Rice	plasma membrane	0.0	0.0
Os05t0548300-01	Rice	plasma membrane	0.0	0.0
Os01t0695800-01	Rice	plasma membrane	0.0	0.0
Os01t0290700-01	Rice	cytosol, plasma membrane	0.0	0.0

Protein Annotations

Gene3D:1.20.1560.10	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	ProteinID:BAF15959.1	ProteinID:BAS91273.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626
GO:GO:0055085	InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640	EnsemblPlantsGene:Os04g0642000	EnsemblPlants:Os04t0642000-01
InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664	ScanProsite:PS00211	PFscan:PS50893	PFscan:PS50929
PANTHER:PTHR24221	PANTHER:PTHR24221:SF382	UniProt:Q0J9M8	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123
TMHMM:TMhelix	UniParc:UPI0000DD92E3	SEG:seg	:	:	:

Description

MULTIDRUG RESISTANCE 12Similar to MDR-like p-glycoprotein. (Os04t0642000-01);Similar to H0423H10.7 protein. (Os04t0642000-02)

Coordinates

chr4:-:32671919..32678320

Molecular Weight (calculated)

65193.5 Da

IEP (calculated)

6.681

GRAVY (calculated)

0.219

Length

612 amino acids

Sequence
(BLAST)

001: MAESAAAAAG DGKVEKAANG GVNGCDAAGE GKKRADQAVA FHELFTFADK WDLVLMAAGS LGALAHGAAM PLFFLLFGDL INGFGKNQTD LRTMTDEVSK
101: YALYFVYLGL VVCASSYAEI ACWMYTGERQ VIALRKAYLD AVLRQDVGFF DTDARTGDIV FGVSTDTLLV QDAIGEKVGN FIHYIATFLA GLVVGFVAAW
201: RLALLSVAVI PAIAFAGGLY AYTLTGLTSK SRESYANAGV VAEQAIAQVR TVYSFAGESK ALNSYSEAIQ NTLKLGYKAG MAKGLGIGCT YGIACMSWAL
301: VFWYAGVFIR NGQTDGGKAF TAIFSAIVGG MSLGQAFSNL GAFSKGKIAG YKLLEVIRQK PSIVHDHKDG KLLAEVHGNI EFKDVTFSYP SRPDVMIFRD
401: FSLFFPAAKT VAVVGGSGSG KSTVVALIER FYDPNEGQVL LDNVDIKTLQ LRWLRDQIGL VNQEPALFAT TIHENILYGK PDATMAEVEA AATASNAHSF
501: ISTLPNGYNT MVGERGIQLS GGQKQRIAIA RAMLKNPKIL LLDEATSALD AGSENIVQEA LDRLMTGRTT VVVAHRLSTI RNVNMIAVIQ QGQVVETGTH
601: DELLAKGSSG AG

Best Arabidopsis Sequence Match ( AT1G10680.1 )
(BLAST)

0001: MQPSNDPAIV DMAAAEKEKK RPSVSFLKLF SFADFYDCVL MALGSIGACI HGASVPVFFI FFGKLINIIG LAYLFPQEAS HKVAKYSLDF VYLSVVILFS
0101: SWLEVACWMH TGERQAAKIR KAYLRSMLSQ DISLFDTEIS TGEVISAITS EILVVQDAIS EKVGNFMHFI SRFIAGFAIG FASVWQISLV TLSIVPFIAL
0201: AGGIYAFVSS GLIVRVRKSY VKANEIAEEV IGNVRTVQAF TGEEKAVSSY QGALRNTYNY GRKAGLAKGL GLGSLHFVLF LSWALLIWFT SIVVHKGIAN
0301: GGESFTTMLN VVIAGLSLGQ AAPDISTFMR ASAAAYPIFQ MIERNTEDKT GRKLGNVNGD ILFKDVTFTY PSRPDVVIFD KLNFVIPAGK VVALVGGSGS
0401: GKSTMISLIE RFYEPTDGAV MLDGNDIRYL DLKWLRGHIG LVNQEPVLFA TTIRENIMYG KDDATSEEIT NAAKLSEAIS FINNLPEGFE TQVGERGIQL
0501: SGGQKQRISI SRAIVKNPSI LLLDEATSAL DAESEKIVQE ALDRVMVGRT TVVVAHRLST VRNADIIAVV GGGKIIESGS HDELISNPDG AYSSLLRIQE
0601: AASPNLNHTP SLPVSTKPLP ELPITETTSS IHQSVNQPDT TKQAKVTVGR LYSMIRPDWK YGLCGTLGSF IAGSQMPLFA LGIAQALVSY YMDWETTQNE
0701: VKRISILFCC GSVITVIVHT IEHTTFGIMG ERLTLRVRQK MFSAILRNEI GWFDKVDNTS SMLASRLESD ATLLRTIVVD RSTILLENLG LVVTAFIISF
0801: ILNWRLTLVV LATYPLIISG HISEKIFMQG YGGNLSKAYL KANMLAGESI SNIRTVVAFC AEEKVLDLYS KELLEPSERS FRRGQMAGIL YGVSQFFIFS
0901: SYGLALWYGS ILMEKGLSSF ESVMKTFMVL IVTALVMGEV LALAPDLLKG NQMVVSVFEL LDRRTQVVGD TGEELSNVEG TIELKGVHFS YPSRPDVTIF
1001: SDFNLLVPSG KSMALVGQSG SGKSSVLSLV LRFYDPTAGI IMIDGQDIKK LKLKSLRRHI GLVQQEPALF ATTIYENILY GKEGASESEV MEAAKLANAH
1101: SFISSLPEGY STKVGERGIQ MSGGQRQRIA IARAVLKNPE ILLLDEATSA LDVESERVVQ QALDRLMRDR TTVVVAHRLS TIKNSDMISV IQDGKIIEQG
1201: SHNILVENKN GPYSKLISLQ QRQRHHP

Arabidopsis Description

ABCB10ABC transporter B family member 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGY1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.