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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX73664
CDX78057
CDX82059
CDX88606
CDX90622
CDX96484
CDY11886
CDY20694
CDY29061
CDY34049
CDY38263
CDY47745
CDY53978
CDY64639
CDY69709
CDY72296

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G28860.1 CDX82059 AT1G73590.1 17237354
AT3G28860.1 CDX96484 AT1G73590.1 17237354
AT3G28860.1 CDY47745 AT1G73590.1 17237354
AT3G28860.1 CDY72296 AT1G73590.1 17237354
AT3G28860.1 CDX73664 AT3G21640.1 14517332
AT3G28860.1 CDX78057 AT3G21640.1 14517332
AT3G28860.1 CDX90622 AT3G21640.1 14517332
AT3G28860.1 CDY29061 AT3G21640.1 14517332
AT3G28860.1 CDY34049 AT3G21640.1 14517332
AT3G28860.1 CDY64639 AT3G21640.1 14517332
AT3G28860.1 CDX88606 AT5G57090.1 17237354
AT3G28860.1 CDY11886 AT5G57090.1 17237354
AT3G28860.1 CDY20694 AT5G57090.1 17237354
AT3G28860.1 CDY38263 AT5G57090.1 17237354
AT3G28860.1 CDY53978 AT5G57090.1 17237354
AT3G28860.1 CDY69709 AT5G57090.1 17237354
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra025359.1-P Field mustard plasma membrane 99.92 98.72
CDY65012 Canola plasma membrane 99.27 98.0
CDY00109 Canola plasma membrane 96.77 96.14
AT3G28860.1 Thale cress plasma membrane 96.85 95.69
CDY20012 Canola plasma membrane 96.77 95.53
PGSC0003DMT400003590 Potato plasma membrane 90.06 89.19
KRH18485 Soybean endoplasmic reticulum, mitochondrion 89.98 89.11
Solyc02g087870.2.1 Tomato plasma membrane 89.89 89.03
KRG93519 Soybean cytosol, peroxisome, plasma membrane 89.57 88.64
VIT_14s0108g00430.t01 Wine grape cytosol, peroxisome, plasma membrane 88.92 88.0
GSMUA_Achr8P24160_001 Banana plasma membrane 77.77 85.36
Os04t0459000-01 Rice plasma membrane 82.62 81.18
TraesCS2D01G322600.1 Wheat cytosol, peroxisome, plasma membrane 81.97 80.28
TraesCS2B01G341800.2 Wheat cytosol, peroxisome, plasma membrane 81.97 80.22
EES12287 Sorghum cytosol, peroxisome, plasma membrane 81.57 79.95
TraesCS2A01G344300.1 Wheat cytosol, peroxisome, plasma membrane 81.57 79.89
HORVU2Hr1G080200.1 Barley plasma membrane 81.65 79.72
Zm00001d025590_P002 Maize cytosol, nucleus, plasma membrane 81.89 79.58
EES12952 Sorghum cytosol, peroxisome, plasma membrane 80.52 78.67
Os04t0642000-01 Rice cytosol, peroxisome, plasma membrane 38.72 78.27
GSMUA_Achr4P09980_001 Banana plasma membrane 72.03 77.88
Zm00001d002119_P006 Maize cytosol 79.63 77.8
TraesCS2B01G550700.2 Wheat plasma membrane 78.9 77.65
Zm00001d026426_P005 Maize cytosol 79.79 77.53
TraesCS2D01G523100.2 Wheat cytosol 79.3 77.18
TraesCS2A01G521400.2 Wheat cytosol, peroxisome, plasma membrane 78.98 77.17
HORVU2Hr1G115180.1 Barley cytosol, peroxisome, plasma membrane 79.06 77.01
CDX84897 Canola cytosol 6.55 68.64
CDX86437 Canola cytosol 7.11 59.06
CDX94395 Canola plasma membrane 50.77 50.89
CDX93393 Canola plasma membrane 50.04 50.53
CDY37953 Canola plasma membrane 49.96 50.45
CDY27639 Canola plasma membrane 49.64 50.41
CDX86442 Canola cytosol, mitochondrion, plastid 2.75 50.0
CDX89380 Canola plasma membrane 50.77 49.25
CDY46744 Canola cytosol, peroxisome, plasma membrane 53.11 49.1
CDX92739 Canola plasma membrane 49.15 48.99
CDX79704 Canola plasma membrane 53.03 48.92
CDY42770 Canola golgi, plasma membrane, vacuole 43.41 47.31
CDX80072 Canola cytosol 45.67 47.16
CDX84896 Canola plasma membrane 39.94 47.0
CDY48003 Canola cytosol 45.03 46.73
CDY27510 Canola cytosol 45.27 46.71
CDX67881 Canola cytosol 44.62 45.96
CDY37776 Canola cytosol, peroxisome, plasma membrane 45.92 45.7
CDY25095 Canola cytosol 44.54 45.69
CDY35168 Canola golgi, peroxisome, plasma membrane 39.94 45.28
CDX86445 Canola plasma membrane 45.11 44.86
CDY15432 Canola cytosol 43.57 44.04
CDX85192 Canola plasma membrane 45.11 43.97
CDY51307 Canola cytosol, peroxisome, plasma membrane 44.87 43.91
CDX89963 Canola cytosol, nucleus, plasma membrane 44.87 43.91
CDY04018 Canola plasma membrane 43.9 43.76
CDY15249 Canola cytosol, peroxisome, plasma membrane 44.79 43.62
CDY24379 Canola plasma membrane 40.99 43.37
CDY20842 Canola endoplasmic reticulum, golgi, plasma membrane 40.42 42.66
CDY58790 Canola peroxisome 41.96 42.16
CDY21871 Canola endoplasmic reticulum, plasma membrane 2.43 41.67
CDY51560 Canola peroxisome 41.88 41.41
CDY64952 Canola peroxisome, plasma membrane, vacuole 30.32 38.07
CDY65312 Canola cytosol 41.88 37.03
CDX76106 Canola cytosol, golgi, peroxisome 41.71 36.86
CDY20443 Canola cytosol, mitochondrion, plasma membrane 41.63 36.76
CDY53591 Canola cytosol, mitochondrion, plasma membrane 41.79 36.72
CDY24958 Canola mitochondrion, plasma membrane, plastid 41.39 36.7
CDY07647 Canola cytosol 41.47 36.62
Protein Annotations
MapMan:11.2.4.3MapMan:24.1.3.1.1Gene3D:3.40.50.300GO:A0A078DGF1InterPro:AAA+_ATPaseInterPro:ABC1_TM_dom
InterPro:ABC1_TM_sfInterPro:ABC_transporter-likeInterPro:ABC_transporter_CSEnsemblPlants:CDX86408ProteinID:CDX86408ProteinID:CDX86408.1
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005215GO:GO:0005488GO:GO:0005524
GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0016787
GO:GO:0016887GO:GO:0042626GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00144546001InterPro:IPR003439InterPro:IPR011527
InterPro:IPR036640InterPro:P-loop_NTPasePFAM:PF00005PFAM:PF00664ScanProsite:PS00211PFscan:PS50893
PFscan:PS50929PANTHER:PTHR24221PANTHER:PTHR24221:SF382SMART:SM00382SUPFAM:SSF52540SUPFAM:SSF90123
TMHMM:TMhelixUniParc:UPI0004EDF490SEG:seg:::
Description
BnaA06g31250D
Coordinates
chrLK031845:+:1431995..1438817
Molecular Weight (calculated)
135144.0 Da
IEP (calculated)
7.650
GRAVY (calculated)
0.131
Length
1237 amino acids
Sequence
(BLAST)
0001: MSETTADTKP VPPAEAEKKK EESLPFFKLF SFADKFDYLL MTTGTLGAIV HGSSMPVFFL LFGEMVNGFG KNQMDLHQMT HEVSKYSLYF VYLGLVVCFS
0101: SYAEIACWMY SGERQVAALR KKYLEAVLKQ DVGFFDTDAR TGDIVFSVST DTLLVQDAIS EKVGNFIHYL STFLAGLVVG FVSAWRLALL SVAVIPGIAF
0201: AGGLYAYTLT GITSKSRESY ANAGVIAEQA IAQVRTVYSY VGESKALSSY SDAIQYTLKL GYKAGMAKGL GLGCTYGIAC MSWALVFWYA GVFIRSGTTD
0301: GGKAFTAIFS AIVGGMSLGQ SFSNLGAFSK GKAAGFKLME IINQRPTIIQ DPLDGKCLDQ VRGDIEFKDV TFSYPSRPDV IIFRNFSIFF PSGKTVAVVG
0401: GSGSGKSTVV SLIERFYDPN NAGQILLDGV EIKTLQLKFL REQIGLVNQE PALFATTILE NILYGKPDAT MVEVEAAASA ANAHSFITLL PKGYDTQVGE
0501: RGVQLSGGQK QRIAIARAML KDPKILLLDE ATSALDASSE SIVQEALDRV MVGRTTVVVA HRLCTIRNVD SIAVIQQGQV VETGTHEELI AKAGAYASLI
0601: RFQEMVGTRD FSNPSTRRTR STRLSHSLYS YSTGADGRIE MISNAETDRK TRAPQNYFYR LLKLNAPEWP YSIMGAVGSV LSGFIGPTFA IVMSNMIEVF
0701: YYTDYDSMER KTKEYVFIYI GAGIYAVIAY LIQHYFFSIM GENLTTRVRR MMLSAILRNE VGWFDEDEHN SSLIAARLAT DAADVKSAIA ERISVILQNM
0801: TSLLTSFIVA FIVEWRVSLL ILATFPLLVL ANFAQQLSLK GFAGDTAKAH AKTSMIAGEG VSNIRTVAAF NAQSKILSLF CHELRVPQKR SFYRSQTSGF
0901: LFGLSQLALY GSEALILWYG AHLVSEGKST FSKVIKVFVV LVITANSVAE TVSLAPEIIR GGEAVGSVFS VLDRQTRIDP DDADADPVET IRGDIDFRHV
1001: DFAYPSRPDV MVFRDFNLRI RAGHSQALVG ASGSGKSSVI AMIERFYDPL GGKVMIDGKD IRRLNLKSLR LKIGLVQQEP ALFAATIFDN IAYGKDGATE
1101: SEVMEAARSA NAHGFISGLP EGYKTPVGER GVQLSGGQKQ RIAIARAVLK NPTVLLLDEA TSALDAESEC VLQEALERLM RGRTTVVVAH RLSTIRGVDS
1201: IGVIQDGRIV EQGSHSELVS RPEGAYSRLL QLQTHRI
Best Arabidopsis Sequence Match ( AT3G28860.1 )
(BLAST)
0001: MSETNTTDAK TVPAEAEKKK EQSLPFFKLF SFADKFDYLL MFVGSLGAIV HGSSMPVFFL LFGQMVNGFG KNQMDLHQMV HEVSRYSLYF VYLGLVVCFS
0101: SYAEIACWMY SGERQVAALR KKYLEAVLKQ DVGFFDTDAR TGDIVFSVST DTLLVQDAIS EKVGNFIHYL STFLAGLVVG FVSAWKLALL SVAVIPGIAF
0201: AGGLYAYTLT GITSKSRESY ANAGVIAEQA IAQVRTVYSY VGESKALNAY SDAIQYTLKL GYKAGMAKGL GLGCTYGIAC MSWALVFWYA GVFIRNGQTD
0301: GGKAFTAIFS AIVGGMSLGQ SFSNLGAFSK GKAAGYKLME IINQRPTIIQ DPLDGKCLDQ VHGNIEFKDV TFSYPSRPDV MIFRNFNIFF PSGKTVAVVG
0401: GSGSGKSTVV SLIERFYDPN SGQILLDGVE IKTLQLKFLR EQIGLVNQEP ALFATTILEN ILYGKPDATM VEVEAAASAA NAHSFITLLP KGYDTQVGER
0501: GVQLSGGQKQ RIAIARAMLK DPKILLLDEA TSALDASSES IVQEALDRVM VGRTTVVVAH RLCTIRNVDS IAVIQQGQVV ETGTHEELIA KSGAYASLIR
0601: FQEMVGTRDF SNPSTRRTRS TRLSHSLSTK SLSLRSGSLR NLSYSYSTGA DGRIEMISNA ETDRKTRAPE NYFYRLLKLN SPEWPYSIMG AVGSILSGFI
0701: GPTFAIVMSN MIEVFYYTDY DSMERKTKEY VFIYIGAGLY AVGAYLIQHY FFSIMGENLT TRVRRMMLSA ILRNEVGWFD EDEHNSSLIA ARLATDAADV
0801: KSAIAERISV ILQNMTSLLT SFIVAFIVEW RVSLLILGTF PLLVLANFAQ QLSLKGFAGD TAKAHAKTSM IAGEGVSNIR TVAAFNAQSK ILSLFCHELR
0901: VPQKRSLYRS QTSGFLFGLS QLALYGSEAL ILWYGAHLVS KGVSTFSKVI KVFVVLVITA NSVAETVSLA PEIIRGGEAV GSVFSVLDRQ TRIDPDDADA
1001: DPVETIRGDI EFRHVDFAYP SRPDVMVFRD FNLRIRAGHS QALVGASGSG KSSVIAMIER FYDPLAGKVM IDGKDIRRLN LKSLRLKIGL VQQEPALFAA
1101: TIFDNIAYGK DGATESEVID AARAANAHGF ISGLPEGYKT PVGERGVQLS GGQKQRIAIA RAVLKNPTVL LLDEATSALD AESECVLQEA LERLMRGRTT
1201: VVVAHRLSTI RGVDCIGVIQ DGRIVEQGSH SELVSRPEGA YSRLLQLQTH RI
Arabidopsis Description
ABCB19ABC transporter B family member 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJX0]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.