CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70737
CDX79704
CDX84294
CDX84994
CDX84995
CDX86408
CDX87453
CDY00109
CDY03849
CDY17273
CDY20012
CDY24397
CDY24398
CDY24399
CDY31621
CDY35849
CDY36104
CDY42101
CDY43662
CDY46744
CDY51132
CDY65012
CDY70440

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73590.1	CDX70737	AT1G25490.1	17889649
AT1G73590.1	CDX84994	AT1G25490.1	17889649
AT1G73590.1	CDX84995	AT1G25490.1	17889649
AT1G73590.1	CDX87453	AT1G25490.1	17889649
AT1G73590.1	CDY03849	AT1G25490.1	17889649
AT1G73590.1	CDY24397	AT1G25490.1	17889649
AT1G73590.1	CDY24398	AT1G25490.1	17889649
AT1G73590.1	CDY24399	AT1G25490.1	17889649
AT1G73590.1	CDY31621	AT1G25490.1	17889649
AT1G73590.1	CDY35849	AT1G25490.1	17889649
AT1G73590.1	CDY36104	AT1G25490.1	17889649
AT1G73590.1	CDY42101	AT1G25490.1	17889649
AT1G73590.1	CDY51132	AT1G25490.1	17889649
AT1G73590.1	CDY70440	AT1G25490.1	17889649
AT1G73590.1	CDX84294	AT2G34650.1	17889649
AT1G73590.1	CDY17273	AT2G34650.1	17889649
AT1G73590.1	CDY43662	AT2G34650.1	17889649
AT1G73590.1	CDX79704	AT2G36910.1	17237354
AT1G73590.1	CDY46744	AT2G36910.1	17237354
AT1G73590.1	CDX86408	AT3G28860.1	17237354
AT1G73590.1	CDY00109	AT3G28860.1	17237354
AT1G73590.1	CDY20012	AT3G28860.1	17237354
AT1G73590.1	CDY65012	AT3G28860.1	17237354

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82059	Canola	golgi, plasma membrane	90.07	98.29
CDX96484	Canola	plasma membrane	86.06	92.34
Bra008105.1-P	Field mustard	golgi, plasma membrane	98.95	92.21
AT1G73590.1	Thale cress	plasma membrane	94.77	87.46
CDY72296	Canola	golgi, plasma membrane	66.38	84.11
KRH48642	Soybean	plasma membrane	77.7	73.72
VIT_17s0000g02420.t01	Wine grape	plasma membrane	75.09	72.56
KRH41847	Soybean	golgi, plasma membrane	75.96	72.31
Solyc03g118740.2.1	Tomato	golgi, plasma membrane	76.48	71.85
PGSC0003DMT400014752	Potato	golgi, plasma membrane	75.78	70.85
KRH39071	Soybean	plasma membrane	51.74	70.71
CDY25767	Canola	plasma membrane	63.59	63.7
CDY12491	Canola	plasma membrane	63.41	63.41
CDY40380	Canola	plasma membrane	62.02	63.35
CDY63826	Canola	plasma membrane	62.02	63.23
CDX96288	Canola	golgi, plasma membrane	64.11	63.12
CDY23471	Canola	golgi, plasma membrane	54.18	63.08
CDY68262	Canola	plasma membrane	64.11	63.01
CDX68327	Canola	plasma membrane	52.61	62.27
CDX91695	Canola	plasma membrane	59.06	59.37
CDY38263	Canola	plasma membrane	59.41	59.0
CDY11886	Canola	plasma membrane	63.59	58.97
CDY41467	Canola	plasma membrane	59.06	58.05
CDY53978	Canola	plasma membrane	59.06	56.88
CDY20694	Canola	plasma membrane	62.54	56.54
CDX88606	Canola	plasma membrane	62.89	56.14
CDY69709	Canola	plasma membrane	59.06	55.94
CDY09501	Canola	plasma membrane	54.36	55.32
CDY67254	Canola	golgi, plasma membrane, vacuole	30.31	50.0
CDX69445	Canola	golgi, plasma membrane, vacuole	30.31	50.0
CDX88341	Canola	plasma membrane	49.13	49.74
CDX87543	Canola	plasma membrane	48.95	49.56
CDX70699	Canola	golgi, plasma membrane, vacuole	29.97	49.43
CDX69551	Canola	endoplasmic reticulum, extracellular, vacuole	17.94	45.98
CDX85565	Canola	plasma membrane	28.92	45.86
CDY63766	Canola	golgi, plasma membrane	23.34	45.12
CDX78697	Canola	plasma membrane	30.31	44.16
CDY66594	Canola	plasma membrane	30.49	38.98
CDX85566	Canola	cytosol	2.61	5.43

Protein Annotations

MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	GO:A0A078I9Z8	UniProt:A0A078I9Z8	InterPro:Auxin_eff_plant	EnsemblPlants:CDY47745
ProteinID:CDY47745	ProteinID:CDY47745.1	GO:GO:0005575	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00088024001	InterPro:Mem_trans	PFAM:PF03547	PANTHER:PTHR31752	PANTHER:PTHR31752:SF14
TIGRFAMs:TIGR00946	TMHMM:TMhelix	UniParc:UPI0004EE390E	SEG:seg	:	:

Description

BnaA02g16500DAuxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A078I9Z8]

Coordinates

chrLK032732:-:134502..137501

Molecular Weight (calculated)

62618.8 Da

IEP (calculated)

8.924

GRAVY (calculated)

0.142

Length

574 amino acids

Sequence
(BLAST)

001: MITATDFYHV MTAMVPLYVA MILAYGSVKW WKIFTPTQCS GINRFVALFA VPLLSFHFIA ANNPYAMNLR FLAADSLQKV IVLSLLFLWC KLSPNGSLDW
101: TITLFSLTTL PNTLVMGIPL LKGMYGDFSG DLMVQIVVLQ CIIWYTLMLF LFEYRGAKLL ISEQFPDTAG SIVSIHVDSD IMSLDGRQPL ETEAEIKEDG
201: KLHVTVRRSN ASRSDIYSRR SQGLSATPRP SNLTNAEIYS LQSSRNPTPR GSSFNHTDFY SMMAAGGGRN SNFGPGEAVF GSKGPTPRPS NYEEDGGAKP
301: AAGAGRFPYH GGGGAAAKGN DGNGRDLHMF VWSSSASPVS DVFGGGVNHH SDYAAATNEQ HKDGNSNDSQ YVEREDFSFG NKDDDSKVLA TDNNISNKAQ
401: QQQPKVMPPT SVMTRLILIM VWRKLIRNPN SYSSLFGITW SLISFKWNIE MPAIIAKSIS ILSDAGLGMA MFSLGLFMAL NPRIIACGNR RAAFAAGMRF
501: LAGPAVMTVA SYAVGLRGVL LRVAIIQAAL PQGIVPFVFA KEYNVHPDIL STAVIFGMLI ALPITLLYYI LVGL

Best Arabidopsis Sequence Match ( AT1G73590.1 )
(BLAST)

001: MITAADFYHV MTAMVPLYVA MILAYGSVKW WKIFTPDQCS GINRFVALFA VPLLSFHFIA ANNPYAMNLR FLAADSLQKV IVLSLLFLWC KLSRNGSLDW
101: TITLFSLSTL PNTLVMGIPL LKGMYGNFSG DLMVQIVVLQ CIIWYTLMLF LFEYRGAKLL ISEQFPDTAG SIVSIHVDSD IMSLDGRQPL ETEAEIKEDG
201: KLHVTVRRSN ASRSDIYSRR SQGLSATPRP SNLTNAEIYS LQSSRNPTPR GSSFNHTDFY SMMASGGGRN SNFGPGEAVF GSKGPTPRPS NYEEDGGPAK
301: PTAAGTAAGA GRFHYQSGGS GGGGGAHYPA PNPGMFSPNT GGGGGTAAKG NAPVVGGKRQ DGNGRDLHMF VWSSSASPVS DVFGGGGGNH HADYSTATND
401: HQKDVKISVP QGNSNDNQYV EREEFSFGNK DDDSKVLATD GGNNISNKTT QAKVMPPTSV MTRLILIMVW RKLIRNPNSY SSLFGITWSL ISFKWNIEMP
501: ALIAKSISIL SDAGLGMAMF SLGLFMALNP RIIACGNRRA AFAAAMRFVV GPAVMLVASY AVGLRGVLLH VAIIQAALPQ GIVPFVFAKE YNVHPDILST
601: AVIFGMLIAL PITLLYYILL GL

Arabidopsis Description

PIN1Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178WFG7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.