Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04182 | Canola | cytosol | 66.67 | 9.23 |
| CDY36104 | Canola | cytosol | 100.0 | 3.06 |
| CDY42101 | Canola | cytosol | 100.0 | 3.06 |
| CDY03849 | Canola | cytosol | 88.89 | 3.02 |
| CDY51132 | Canola | cytosol | 94.44 | 2.9 |
| AT1G25490.1 | Thale cress | cytosol | 94.44 | 2.89 |
| CDY69424 | Canola | cytosol | 77.78 | 2.64 |
| CDY13586 | Canola | cytosol | 83.33 | 2.52 |
| CDX70737 | Canola | cytosol | 5.56 | 0.84 |
| CDY35849 | Canola | plasma membrane | 5.56 | 0.74 |
| CDX87453 | Canola | cytosol | 5.56 | 0.65 |
| CDY31621 | Canola | endoplasmic reticulum, extracellular | 5.56 | 0.63 |
| CDY66919 | Canola | cytosol | 5.56 | 0.27 |
| CDX84993 | Canola | plasma membrane | 5.56 | 0.24 |
| CDY13585 | Canola | cytosol, endoplasmic reticulum, golgi | 5.56 | 0.23 |
| CDY49184 | Canola | mitochondrion | 0.0 | 0.0 |
| CDY70440 | Canola | cytosol | 0.0 | 0.0 |
| CDY39185 | Canola | cytosol | 0.0 | 0.0 |
| CDY24398 | Canola | extracellular, vacuole | 0.0 | 0.0 |
| CDY24397 | Canola | cytosol | 0.0 | 0.0 |
| CDY04181 | Canola | endoplasmic reticulum | 0.0 | 0.0 |
| CDX84995 | Canola | cytosol | 0.0 | 0.0 |
| CDX84994 | Canola | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY24399 | EnsemblPlantsGene:GSBRNA2T00026635001 | ProteinID:CDY24399 | ProteinID:CDY24399.1 | UniParc:UPI0004EECC50 | UniProt:A0A078GGD8 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaCnng04660DBnaCnng04660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGD8]
Coordinates
chrLK032158:-:176373..176429
Molecular Weight (calculated)
2046.6 Da
IEP (calculated)
3.295
GRAVY (calculated)
0.961
Length
18 amino acids
Sequence
(BLAST)
(BLAST)
1: MAMVDEPLYP IALLIDEL
001: MAMVDEPLYP IAVLIDELKN DDIQLRLNSI RRLSTIARAL GEERTRKELI PFLSENSDDD DEVLLAMAEE LGVFIPFVGG IEFAHVLLPP LESLCTVEET
101: CVREKAVESL CKIGSQMKEN DLVESFVPLV KRLAGGEWFA ARVSACGIFH VAYQGCTDVL KTELRATYSQ LCKDDMPMVR RAAASNLGKF ATTVESTFLI
201: AEIMTMFDDL TKDDQDSVRL LAVEGCAALG KLLEPQDCVA RILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPDCTRTD LVPAYVRLLR DNEAEVRIAA
301: AGKVTKFCRL LNPELAIQHI LPCVKELSSD SSQHVRSALA SVIMGMAPIL GKDSTIEHLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY VPLLASQLGI GFFDDKLGAL CMQWLQDKVY SIREAAANNL KRLAEEFGPE WAMQHLVPQV LDMVNNPHYL HRMMVLRAIS
501: LMAPVMGSEI TCSKFLPVVV EASKDRVPNI KFNVAKLLQS LIPIVDQSVV DKTIRQCLVD LSEDPDVDVR YFANQALNSI DGSTAAQS
101: CVREKAVESL CKIGSQMKEN DLVESFVPLV KRLAGGEWFA ARVSACGIFH VAYQGCTDVL KTELRATYSQ LCKDDMPMVR RAAASNLGKF ATTVESTFLI
201: AEIMTMFDDL TKDDQDSVRL LAVEGCAALG KLLEPQDCVA RILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPDCTRTD LVPAYVRLLR DNEAEVRIAA
301: AGKVTKFCRL LNPELAIQHI LPCVKELSSD SSQHVRSALA SVIMGMAPIL GKDSTIEHLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY VPLLASQLGI GFFDDKLGAL CMQWLQDKVY SIREAAANNL KRLAEEFGPE WAMQHLVPQV LDMVNNPHYL HRMMVLRAIS
501: LMAPVMGSEI TCSKFLPVVV EASKDRVPNI KFNVAKLLQS LIPIVDQSVV DKTIRQCLVD LSEDPDVDVR YFANQALNSI DGSTAAQS
Arabidopsis Description
PP2AA1Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform [Source:UniProtKB/Swiss-Prot;Acc:Q38845]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.