Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67755 | Canola | nucleus | 95.19 | 93.99 |
| Bra003346.1-P | Field mustard | nucleus | 91.35 | 93.14 |
| CDX71939 | Canola | nucleus, plastid | 81.09 | 84.05 |
| AT3G58630.1 | Thale cress | nucleus | 83.01 | 80.69 |
| GSMUA_Achr1P11500_001 | Banana | nucleus | 38.78 | 48.99 |
| GSMUA_Achr6P26840_001 | Banana | cytosol, mitochondrion, nucleus | 40.71 | 48.85 |
| KRH27047 | Soybean | nucleus | 47.12 | 47.88 |
| GSMUA_Achr5P09160_001 | Banana | nucleus | 38.14 | 47.22 |
| KRH22283 | Soybean | nucleus | 45.83 | 46.73 |
| GSMUA_Achr9P06410_001 | Banana | nucleus | 40.38 | 46.67 |
| GSMUA_Achr1P27460_001 | Banana | nucleus | 36.22 | 44.31 |
| Solyc12g010890.1.1 | Tomato | nucleus | 44.55 | 43.03 |
| VIT_12s0028g02150.t01 | Wine grape | cytosol | 43.59 | 39.19 |
| CDY36316 | Canola | nucleus | 30.77 | 38.1 |
| CDX70144 | Canola | cytosol | 30.45 | 38.0 |
| CDY00995 | Canola | nucleus | 31.09 | 37.89 |
| HORVU3Hr1G061870.1 | Barley | nucleus | 38.14 | 37.66 |
| TraesCS3B01G305100.1 | Wheat | nucleus | 38.14 | 37.3 |
| TraesCS3D01G271000.1 | Wheat | nucleus | 37.82 | 37.11 |
| TraesCS3A01G271400.1 | Wheat | nucleus | 37.82 | 37.11 |
| Os05t0560600-01 | Rice | nucleus | 40.06 | 36.13 |
| EES03423 | Sorghum | cytosol | 36.54 | 35.96 |
| Zm00001d011571_P001 | Maize | cytosol | 36.22 | 35.87 |
| Zm00001d043902_P001 | Maize | nucleus | 36.54 | 35.85 |
| PGSC0003DMT400020194 | Potato | plastid | 43.59 | 35.51 |
| EES18672 | Sorghum | nucleus | 38.78 | 34.87 |
| TraesCS1A01G392300.1 | Wheat | nucleus | 39.42 | 34.84 |
| TraesCS1D01G400500.1 | Wheat | nucleus | 39.1 | 34.56 |
| Os01t0674000-01 | Rice | nucleus | 36.54 | 34.34 |
| TraesCS1B01G420500.1 | Wheat | nucleus | 39.1 | 34.27 |
| Zm00001d038994_P001 | Maize | cytosol | 37.5 | 34.11 |
| PGSC0003DMT400052607 | Potato | nucleus, plastid | 42.31 | 33.25 |
| Solyc07g055100.2.1 | Tomato | nucleus, plastid | 42.95 | 31.24 |
| CDX98849 | Canola | cytosol | 30.45 | 30.94 |
| CDY33246 | Canola | nucleus | 29.81 | 30.39 |
| CDY39101 | Canola | nucleus, plastid | 29.17 | 29.84 |
| CDY39099 | Canola | nucleus | 30.13 | 29.65 |
| CDY61477 | Canola | nucleus, plastid | 28.21 | 29.24 |
| Zm00001d030350_P001 | Maize | nucleus | 19.23 | 28.57 |
| CDY02487 | Canola | nucleus, plastid | 28.21 | 28.57 |
| CDY51405 | Canola | nucleus | 11.54 | 28.35 |
| CDY08216 | Canola | nucleus | 28.53 | 27.13 |
| CDX75751 | Canola | nucleus | 30.77 | 25.81 |
| CDY26148 | Canola | nucleus, plastid | 28.53 | 24.93 |
| CDX93016 | Canola | nucleus | 15.71 | 24.75 |
| CDX94808 | Canola | nucleus | 21.15 | 20.56 |
| CDY33093 | Canola | cytosol, plastid | 28.53 | 20.37 |
Protein Annotations
| EnsemblPlants:CDX98311 | EnsemblPlantsGene:GSBRNA2T00105853001 | ncoils:Coil | PANTHER:PTHR31307 | PANTHER:PTHR31307:SF2 | PFAM:PF13837 |
| ProteinID:CDX98311 | ProteinID:CDX98311.1 | SEG:seg | UniParc:UPI0004EC9896 | MapMan:15.5.20 | : |
Description
BnaC06g16720D
Coordinates
chrLK031904:-:521853..523770
Molecular Weight (calculated)
35209.3 Da
IEP (calculated)
9.830
GRAVY (calculated)
-0.794
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: MKDAVNDSFS PGSSRPSPSM LSREDYWSEE ATFTLIQAWG RRYVDLSRGG LRQKHWQEVA NAVNDRHFNT GRNVSAAKSQ PYRTDVQCKN RIDTLKKKYK
101: VEKARVSESH VSAWPFFSDL DELLRETFPA SSSAAPDDSQ RPSPSLPLSI VPVPVAPRSA ISRRPAPAIM SLGGDNLLGF RGNLNAFAAA AAAAASPAYE
201: DDSDGSRSRS SGGNNRKRER ETEIEEKKGY KEVAEAIERF GKIYEKVEER KRKEMVELEK QRMRFAKELE CHRMQLFTEM QVRLHKLRRS SGPTSSANAA
301: LEYGMMDFPS YF
101: VEKARVSESH VSAWPFFSDL DELLRETFPA SSSAAPDDSQ RPSPSLPLSI VPVPVAPRSA ISRRPAPAIM SLGGDNLLGF RGNLNAFAAA AAAAASPAYE
201: DDSDGSRSRS SGGNNRKRER ETEIEEKKGY KEVAEAIERF GKIYEKVEER KRKEMVELEK QRMRFAKELE CHRMQLFTEM QVRLHKLRRS SGPTSSANAA
301: LEYGMMDFPS YF
001: MDTVNDSFSP GSSRPSPATL SREDCWSEEA TFTLIQAWGN RYVDLSRGNL RQKHWQEVAN AVNDRHYNTG RNVSAAKSQP YRTDVQCKNR IDTLKKKYKV
101: EKARVSESNP GAYISPWPFF SALDDLLRES FPTSSNPDST DNIPHQRLSL PMSINPVPVA PRSAIPRRPA TSPAIIPHAG DDLLGFRGNL NAFAAAAAAA
201: ACPASEDDSE GSRSRSSGRS GSNKKRERKI EKKQGYKEVA DAIERLGQIY ERVEEKKRKE MVELEKQRMR FAKELECHRM QLFTEMQVRL HKLRRTSGSK
301: GPTSSASAAL DYGMMDFPSY F
101: EKARVSESNP GAYISPWPFF SALDDLLRES FPTSSNPDST DNIPHQRLSL PMSINPVPVA PRSAIPRRPA TSPAIIPHAG DDLLGFRGNL NAFAAAAAAA
201: ACPASEDDSE GSRSRSSGRS GSNKKRERKI EKKQGYKEVA DAIERLGQIY ERVEEKKRKE MVELEKQRMR FAKELECHRM QLFTEMQVRL HKLRRTSGSK
301: GPTSSASAAL DYGMMDFPSY F
Arabidopsis Description
Sequence-specific DNA binding transcription factor [Source:UniProtKB/TrEMBL;Acc:Q8GXR6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.