Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G271400.1 | Wheat | nucleus | 99.06 | 99.37 |
| TraesCS3D01G271000.1 | Wheat | nucleus | 98.75 | 99.06 |
| HORVU3Hr1G061870.1 | Barley | nucleus | 96.87 | 97.78 |
| EES03423 | Sorghum | cytosol | 80.25 | 80.76 |
| Zm00001d011571_P001 | Maize | cytosol | 79.62 | 80.63 |
| Zm00001d043902_P001 | Maize | nucleus | 79.62 | 79.87 |
| Os01t0674000-01 | Rice | nucleus | 81.5 | 78.31 |
| TraesCS1B01G420500.1 | Wheat | nucleus | 68.03 | 60.96 |
| GSMUA_Achr6P26840_001 | Banana | cytosol, mitochondrion, nucleus | 43.26 | 53.08 |
| GSMUA_Achr5P09160_001 | Banana | nucleus | 41.69 | 52.78 |
| GSMUA_Achr1P11500_001 | Banana | nucleus | 39.81 | 51.42 |
| GSMUA_Achr9P06410_001 | Banana | nucleus | 43.26 | 51.11 |
| GSMUA_Achr1P27460_001 | Banana | nucleus | 39.81 | 49.8 |
| VIT_10s0003g01300.t01 | Wine grape | nucleus | 40.44 | 42.72 |
| KRH27047 | Soybean | nucleus | 39.81 | 41.37 |
| Solyc02g076810.2.1 | Tomato | cytosol | 36.36 | 41.28 |
| KRH21272 | Soybean | nucleus | 39.81 | 40.71 |
| KRH22283 | Soybean | nucleus | 38.56 | 40.2 |
| PGSC0003DMT400026432 | Potato | cytosol | 36.36 | 40.14 |
| Bra007407.1-P | Field mustard | nucleus, plastid | 36.05 | 39.25 |
| CDX71939 | Canola | nucleus, plastid | 36.36 | 38.54 |
| CDX98311 | Canola | nucleus | 37.3 | 38.14 |
| Bra003346.1-P | Field mustard | nucleus | 36.05 | 37.58 |
| Solyc12g010890.1.1 | Tomato | nucleus | 37.93 | 37.46 |
| CDX67755 | Canola | nucleus | 36.99 | 37.34 |
| KRH11016 | Soybean | nucleus | 29.15 | 37.2 |
| AT3G58630.1 | Thale cress | nucleus | 36.05 | 35.83 |
| VIT_12s0028g02150.t01 | Wine grape | cytosol | 34.17 | 31.41 |
| PGSC0003DMT400020194 | Potato | plastid | 37.62 | 31.33 |
| PGSC0003DMT400052607 | Potato | nucleus, plastid | 37.3 | 29.97 |
| Solyc07g055100.2.1 | Tomato | nucleus, plastid | 36.68 | 27.27 |
| TraesCS2B01G332100.1 | Wheat | nucleus, plastid | 33.54 | 25.72 |
| TraesCS6B01G230000.1 | Wheat | nucleus | 30.72 | 23.56 |
| TraesCS3B01G274700.1 | Wheat | nucleus, plastid | 19.44 | 19.87 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G305100.1 | EnsemblPlantsGene:TraesCS3B01G305100 | ncoils:Coil | PANTHER:PTHR31307 | PANTHER:PTHR31307:SF33 | PFAM:PF13837 |
| SEG:seg | MapMan:15.5.20 | : | : | : | : |
Description
No Description!
Coordinates
chr3B:-:489980323..489981338
Molecular Weight (calculated)
34703.1 Da
IEP (calculated)
10.351
GRAVY (calculated)
-0.777
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGKLPPPNP NLPYREDCWS EGETAALVDA WGSRYIDLNR GSLRQPQWRE VADAVNTRPG ASARRRPPRT DIQCKNRVDT LKKKYKAERA RGGPSPWPFF
101: RQLDVLVGPT LSAAAAKKPS PPRALPMLRR RMSPSRSPSP PSPAPPMALP LPNYRRGSNL PAADLFHKAA AAAAAADSDS DDGYNNNNNY DDDEGSQQSA
201: SRSVSSHSGG NGPPVLGGGG GGGGGNKRKR GGAGGFGELA MAMETFAEMY ERMEAAKQRH AEEMEKQRIK FLKDLELKRM QAFVDMQLQL SRVKQAKNGT
301: SEMLMSLAAL PFLSNPAYL
101: RQLDVLVGPT LSAAAAKKPS PPRALPMLRR RMSPSRSPSP PSPAPPMALP LPNYRRGSNL PAADLFHKAA AAAAAADSDS DDGYNNNNNY DDDEGSQQSA
201: SRSVSSHSGG NGPPVLGGGG GGGGGNKRKR GGAGGFGELA MAMETFAEMY ERMEAAKQRH AEEMEKQRIK FLKDLELKRM QAFVDMQLQL SRVKQAKNGT
301: SEMLMSLAAL PFLSNPAYL
001: MEDDEDIRSQ GSDSPDPSSS PPAGRITVTV ASAGPPSYSL TPPGNSSQKD PDALALALLP IQASGGGNNS SGRPTGGGGR EDCWSEAATA VLIDAWGERY
101: LELSRGNLKQ KHWKEVAEIV SSREDYGKIP KTDIQCKNRI DTVKKKYKQE KVRIANGGGR SRWVFFDKLD RLIGSTAKIP TATSGVSGPV GGLHKIPMGI
201: PMGSRSNLYH QQAKAATPPF NNLDRLIGAT ARVSAASFGG SGGGGGGGSV NVPMGIPMSS RSAPFGQQGR TLPQQGRTLP QQQQQGMMVK RCSESKRWRF
301: RKRNASDSDS ESEAAMSDDS GDSLPPPPLS KRMKTEEKKK QDGDGVGNKW RELTRAIMRF GEAYEQTENA KLQQVVEMEK ERMKFLKELE LQRMQFFVKT
401: QLEISQLKQQ HGRRMGNTSN DHHHSRKNNI NAIVNNNNDL GNN
101: LELSRGNLKQ KHWKEVAEIV SSREDYGKIP KTDIQCKNRI DTVKKKYKQE KVRIANGGGR SRWVFFDKLD RLIGSTAKIP TATSGVSGPV GGLHKIPMGI
201: PMGSRSNLYH QQAKAATPPF NNLDRLIGAT ARVSAASFGG SGGGGGGGSV NVPMGIPMSS RSAPFGQQGR TLPQQGRTLP QQQQQGMMVK RCSESKRWRF
301: RKRNASDSDS ESEAAMSDDS GDSLPPPPLS KRMKTEEKKK QDGDGVGNKW RELTRAIMRF GEAYEQTENA KLQQVVEMEK ERMKFLKELE LQRMQFFVKT
401: QLEISQLKQQ HGRRMGNTSN DHHHSRKNNI NAIVNNNNDL GNN
Arabidopsis Description
ASIL2ASIL2 [Source:UniProtKB/TrEMBL;Acc:A0A178V8Z7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.